PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45001-45050 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | het | 72.4138 | 75.0000 | 70.0000 | 83.0508 | 3 | 1 | 7 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.7136 | 9 | 4 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.0251 | 48.4848 | 53.8462 | 69.0476 | 16 | 17 | 7 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 95.9391 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 96.5217 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | het | 77.7778 | 100.0000 | 63.6364 | 54.1667 | 7 | 0 | 7 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.3333 | 100.0000 | 87.5000 | 97.8723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 99.3226 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 98.8981 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 87.5000 | 87.5000 | 87.5000 | 99.5368 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 77.7778 | 70.0000 | 87.5000 | 99.6063 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | * | 50.2242 | 47.0588 | 53.8462 | 60.6061 | 8 | 9 | 7 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 87.5000 | 84.6154 | 0 | 6 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 87.5000 | 84.3137 | 0 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.1075 | 18.1818 | 87.5000 | 86.8852 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | het | 48.2759 | 33.3333 | 87.5000 | 86.8852 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.1075 | 18.1818 | 87.5000 | 88.4058 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 48.2759 | 33.3333 | 87.5000 | 88.4058 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | * | 30.1075 | 18.1818 | 87.5000 | 88.7324 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | het | 48.2759 | 33.3333 | 87.5000 | 88.7324 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | * | 7.7994 | 4.2553 | 46.6667 | 93.6170 | 2 | 45 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | het | 14.1414 | 8.3333 | 46.6667 | 93.3628 | 2 | 22 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 73.6842 | 100.0000 | 58.3333 | 83.5616 | 2 | 0 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | homalt | 70.0000 | 53.8462 | 100.0000 | 50.0000 | 7 | 6 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.0539 | 11.9565 | 36.8421 | 58.6957 | 11 | 81 | 7 | 12 | 7 | 58.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.3038 | 55.5556 | 36.8421 | 58.6957 | 5 | 4 | 7 | 12 | 7 | 58.3333 | |
| gduggal-snapplat | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8125 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | func_cds | hetalt | 93.3333 | 87.5000 | 100.0000 | 46.1538 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8125 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 70.0000 | 94.0828 | 0 | 0 | 7 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 1.3072 | 0.6579 | 100.0000 | 86.2745 | 6 | 906 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.9562 | 0.4804 | 100.0000 | 89.2308 | 6 | 1243 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.9562 | 0.4804 | 100.0000 | 89.2308 | 6 | 1243 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 1.8111 | 0.9524 | 18.4211 | 68.8525 | 7 | 728 | 7 | 31 | 22 | 70.9677 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 4.7019 | 2.5478 | 30.4348 | 66.6667 | 4 | 153 | 7 | 16 | 14 | 87.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 5.9197 | 3.2787 | 30.4348 | 64.6154 | 2 | 59 | 7 | 16 | 14 | 87.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | het | 14.1414 | 8.9744 | 33.3333 | 92.6056 | 7 | 71 | 7 | 14 | 6 | 42.8571 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 93.8053 | 10 | 16 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | homalt | 56.4103 | 39.2857 | 100.0000 | 94.2149 | 11 | 17 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 55.0000 | 37.9310 | 100.0000 | 94.3089 | 11 | 18 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 18.4211 | 11.8644 | 41.1765 | 77.0270 | 7 | 52 | 7 | 10 | 4 | 40.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | hetalt | 19.7183 | 11.1111 | 87.5000 | 93.7008 | 8 | 64 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.7097 | 6 | 3 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8037 | 7 | 0 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 75.8621 | 7 | 1 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.4110 | 7 | 7 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 58.3333 | 88.4615 | 0 | 0 | 7 | 5 | 3 | 60.0000 | |