PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44201-44250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6038 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.7368 | 100.0000 | 90.0000 | 99.2260 | 1 | 0 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.9866 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2810 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.4815 | 68.7500 | 100.0000 | 75.0000 | 11 | 5 | 9 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.0698 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 94.7368 | 90.0000 | 100.0000 | 98.2353 | 9 | 1 | 9 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5224 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.0698 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9688 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 72.0000 | 56.2500 | 100.0000 | 93.2331 | 9 | 7 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.0690 | 52.9412 | 75.0000 | 99.6461 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.4286 | 19.5652 | 23.6842 | 60.8247 | 9 | 37 | 9 | 29 | 29 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4375 | 9 | 7 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4402 | 9 | 7 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 98.4743 | 9 | 0 | 9 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 75.0000 | 64.2857 | 90.0000 | 95.1691 | 9 | 5 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9388 | 9 | 4 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2437 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 52.6316 | 9 | 1 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 52.6316 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 85.7143 | 81.8182 | 90.0000 | 96.0630 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 85.7143 | 81.8182 | 90.0000 | 96.3636 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 85.7143 | 81.8182 | 90.0000 | 96.3768 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.2743 | 85.1852 | 64.2857 | 85.4167 | 23 | 4 | 9 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1935 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9641 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.2825 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 9 | 3 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 62.0690 | 52.9412 | 75.0000 | 93.5135 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 80.3922 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.0000 | 100.0000 | 81.8182 | 97.2637 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1045 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 93.6709 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.7644 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 94.7917 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5252 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.8571 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6731 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.0474 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2459 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2459 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 94.8187 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |