PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44101-44150 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 57.1429 | 9 | 1 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 94.3396 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 95.1613 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e1 | hetalt | 62.0690 | 45.0000 | 100.0000 | 95.1872 | 9 | 11 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.0000 | 93.9024 | 0 | 0 | 9 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 56.2500 | 94.0520 | 0 | 0 | 9 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 60.0000 | 93.5345 | 0 | 0 | 9 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.0000 | 98.2487 | 0 | 0 | 9 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3271 | 0 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5455 | 0 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.0251 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.3947 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8432 | 8 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 47.0588 | 7 | 1 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 35.7143 | 9 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 68.9655 | 9 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.0980 | 6 | 0 | 9 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.6710 | 6 | 0 | 9 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 95.7265 | 6 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 47.0588 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1115 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 73.5294 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.9239 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.8333 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 95.8333 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 95.3368 | 9 | 1 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.2547 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.9375 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 72.0000 | 100.0000 | 56.2500 | 91.0112 | 9 | 0 | 9 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.9375 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.6596 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 95.5224 | 9 | 5 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9900 | 9 | 4 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1788 | 9 | 0 | 9 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 72.0000 | 100.0000 | 56.2500 | 97.9408 | 1 | 0 | 9 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.0645 | 50.0000 | 69.2308 | 31.5789 | 4 | 4 | 9 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 45.0000 | 69.2308 | 33.3333 | 58.4615 | 9 | 4 | 9 | 18 | 13 | 72.2222 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 62.0690 | 75.0000 | 52.9412 | 92.5764 | 9 | 3 | 9 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 11.3208 | 6.7669 | 34.6154 | 89.9614 | 9 | 124 | 9 | 17 | 13 | 76.4706 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 21.4286 | 39.1304 | 14.7541 | 76.8939 | 9 | 14 | 9 | 52 | 45 | 86.5385 | |
| ciseli-custom | INDEL | I6_15 | func_cds | het | 52.9412 | 37.5000 | 90.0000 | 41.1765 | 9 | 15 | 9 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.5517 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.0238 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 97.0326 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 9 | 0 | 9 | 0 | 0 | ||