PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43951-44000 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 91.8699 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 93.2886 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 81.8182 | 81.8182 | 81.8182 | 99.0886 | 9 | 2 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 90.0000 | 90.0000 | 90.0000 | 99.1349 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8000 | 9 | 6 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.0233 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.2459 | 5 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.4839 | 5 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | het | 87.8049 | 85.7143 | 90.0000 | 37.5000 | 6 | 1 | 9 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.5094 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6230 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 9 | 6 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.8723 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.1875 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 87.8378 | 9 | 2 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 76.5957 | 66.6667 | 90.0000 | 84.1270 | 10 | 5 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 76.5957 | 66.6667 | 90.0000 | 85.9155 | 10 | 5 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 76.5957 | 66.6667 | 90.0000 | 85.9155 | 10 | 5 | 9 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 43.7500 | 8 | 4 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | het | 94.7368 | 100.0000 | 90.0000 | 91.5966 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 95.1087 | 9 | 5 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 60.8696 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | * | 81.8182 | 81.8182 | 81.8182 | 85.3333 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.6429 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7346 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3710 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2810 | 9 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 7.6596 | 4.0000 | 90.0000 | 81.1321 | 5 | 120 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 69.2308 | 95.7377 | 0 | 0 | 9 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.8678 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 95.5224 | 9 | 5 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9900 | 9 | 4 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1788 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.5517 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.0238 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 97.0326 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1087 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8140 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9880 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.8140 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 94.7368 | 90.0000 | 100.0000 | 98.3051 | 9 | 1 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1914 | 9 | 0 | 9 | 0 | 0 | ||