PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4351-4400 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | map_l125_m1_e0 | het | 91.5438 | 96.5345 | 87.0437 | 81.1544 | 17633 | 633 | 17501 | 2605 | 206 | 7.9079 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e1 | homalt | 99.8146 | 99.8175 | 99.8118 | 69.0869 | 17500 | 32 | 17500 | 33 | 14 | 42.4242 | |
| hfeng-pmm1 | SNP | * | map_l125_m2_e1 | homalt | 99.8117 | 99.7947 | 99.8288 | 69.0610 | 17496 | 36 | 17496 | 30 | 12 | 40.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5348 | 99.3169 | 97.7649 | 70.3556 | 17448 | 120 | 17496 | 400 | 17 | 4.2500 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e1 | homalt | 99.8003 | 99.7775 | 99.8231 | 68.9786 | 17493 | 39 | 17493 | 31 | 13 | 41.9355 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | homalt | 98.6915 | 97.4276 | 99.9886 | 54.9898 | 17498 | 462 | 17493 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l125_m2_e1 | homalt | 99.8144 | 99.7034 | 99.9257 | 69.0000 | 17480 | 52 | 17480 | 13 | 13 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2929 | 99.5560 | 99.0312 | 67.2462 | 17490 | 78 | 17480 | 171 | 15 | 8.7719 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | homalt | 99.7859 | 99.6635 | 99.9086 | 68.1960 | 17473 | 59 | 17480 | 16 | 16 | 100.0000 | |
| anovak-vg | SNP | ti | map_l150_m2_e0 | * | 79.7989 | 85.9302 | 74.4843 | 79.9053 | 17626 | 2886 | 17477 | 5987 | 1363 | 22.7660 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.8647 | 96.7839 | 94.9628 | 65.9014 | 17003 | 565 | 17476 | 927 | 381 | 41.1003 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | het | 72.2999 | 57.0570 | 98.6561 | 56.4180 | 17472 | 13150 | 17472 | 238 | 9 | 3.7815 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7744 | 99.6350 | 99.9142 | 65.3032 | 17468 | 64 | 17468 | 15 | 11 | 73.3333 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | * | 91.3679 | 84.3025 | 99.7259 | 80.0126 | 17470 | 3253 | 17466 | 48 | 27 | 56.2500 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | homalt | 99.7600 | 99.5779 | 99.9428 | 65.9933 | 17458 | 74 | 17465 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | homalt | 99.8788 | 99.8719 | 99.8856 | 62.1452 | 17937 | 23 | 17464 | 20 | 12 | 60.0000 | |
| jli-custom | SNP | * | map_l125_m2_e1 | homalt | 99.7486 | 99.5779 | 99.9199 | 65.4177 | 17458 | 74 | 17458 | 14 | 13 | 92.8571 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7315 | 99.5779 | 99.8856 | 66.0476 | 17458 | 74 | 17458 | 20 | 15 | 75.0000 | |
| ckim-dragen | SNP | ti | HG002compoundhet | * | 99.7941 | 99.8055 | 99.7828 | 35.8899 | 17444 | 34 | 17457 | 38 | 18 | 47.3684 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | homalt | 99.7429 | 99.5665 | 99.9199 | 68.0072 | 17456 | 76 | 17456 | 14 | 13 | 92.8571 | |
| dgrover-gatk | SNP | ti | HG002compoundhet | * | 99.8369 | 99.8284 | 99.8455 | 35.6925 | 17448 | 30 | 17446 | 27 | 21 | 77.7778 | |
| bgallagher-sentieon | SNP | ti | HG002compoundhet | * | 99.8512 | 99.8226 | 99.8798 | 35.5355 | 17447 | 31 | 17445 | 21 | 14 | 66.6667 | |
| jli-custom | SNP | ti | HG002compoundhet | * | 99.7826 | 99.8112 | 99.7541 | 35.5495 | 17445 | 33 | 17445 | 43 | 22 | 51.1628 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | homalt | 98.4338 | 97.1102 | 99.7940 | 67.2966 | 17441 | 519 | 17442 | 36 | 20 | 55.5556 | |
| jlack-gatk | SNP | ti | HG002compoundhet | * | 99.6570 | 99.7425 | 99.5716 | 36.7466 | 17433 | 45 | 17431 | 75 | 22 | 29.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4577 | 99.1576 | 99.7596 | 63.2532 | 17420 | 148 | 17430 | 42 | 21 | 50.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.1915 | 99.5930 | 94.9031 | 45.9580 | 18109 | 74 | 17428 | 936 | 71 | 7.5855 | |
| ckim-dragen | SNP | * | map_l125_m2_e1 | homalt | 99.5683 | 99.3212 | 99.8166 | 63.9224 | 17413 | 119 | 17418 | 32 | 29 | 90.6250 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| dgrover-gatk | SNP | * | map_l125_m2_e1 | homalt | 99.6110 | 99.3269 | 99.8967 | 66.5258 | 17414 | 118 | 17414 | 18 | 13 | 72.2222 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | * | 70.6023 | 54.6496 | 99.7079 | 77.9961 | 17407 | 14445 | 17408 | 51 | 12 | 23.5294 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | homalt | 97.9436 | 96.1822 | 99.7707 | 62.4459 | 17610 | 699 | 17408 | 40 | 33 | 82.5000 | |
| cchapple-custom | SNP | ti | HG002compoundhet | * | 99.2669 | 98.9816 | 99.5539 | 35.4095 | 17300 | 178 | 17406 | 78 | 64 | 82.0513 | |
| rpoplin-dv42 | SNP | ti | HG002compoundhet | * | 99.6565 | 99.5938 | 99.7193 | 35.2092 | 17407 | 71 | 17405 | 49 | 42 | 85.7143 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | * | 81.3480 | 68.8368 | 99.4174 | 84.4949 | 17404 | 7879 | 17405 | 102 | 20 | 19.6078 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6682 | 96.2747 | 75.5590 | 61.4479 | 17186 | 665 | 17402 | 5629 | 124 | 2.2029 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | homalt | 99.5110 | 99.2471 | 99.7764 | 69.2363 | 17400 | 132 | 17400 | 39 | 38 | 97.4359 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9673 | 98.9982 | 98.9364 | 66.6862 | 17392 | 176 | 17395 | 187 | 18 | 9.6257 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3259 | 98.9526 | 99.7019 | 63.0961 | 17384 | 184 | 17391 | 52 | 20 | 38.4615 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.4227 | 98.4802 | 90.6863 | 72.2353 | 17301 | 267 | 17390 | 1786 | 11 | 0.6159 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | * | 98.0359 | 99.0731 | 97.0203 | 40.7433 | 17316 | 162 | 17387 | 534 | 136 | 25.4682 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0989 | 95.1988 | 99.0764 | 32.0722 | 17310 | 873 | 17379 | 162 | 93 | 57.4074 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | homalt | 99.4990 | 99.1216 | 99.8793 | 70.3837 | 17378 | 154 | 17378 | 21 | 13 | 61.9048 | |
| astatham-gatk | SNP | * | map_l125_m2_e1 | homalt | 99.4760 | 99.0703 | 99.8850 | 66.1765 | 17369 | 163 | 17369 | 20 | 16 | 80.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1551 | 97.3006 | 99.0247 | 63.5436 | 17338 | 481 | 17362 | 171 | 64 | 37.4269 | |