PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43351-43400 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 87.6404 | 11 | 20 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | func_cds | homalt | 95.6522 | 91.6667 | 100.0000 | 54.1667 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l100_m0_e0 | homalt | 62.8571 | 45.8333 | 100.0000 | 74.4186 | 11 | 13 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | het | 43.1373 | 28.2051 | 91.6667 | 96.4072 | 11 | 28 | 11 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | homalt | 59.4595 | 42.3077 | 100.0000 | 77.5510 | 11 | 15 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 67.0732 | 55.5556 | 84.6154 | 78.3333 | 10 | 8 | 11 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 67.6923 | 66.6667 | 68.7500 | 71.4286 | 10 | 5 | 11 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 69.7183 | 56.2500 | 91.6667 | 74.4681 | 9 | 7 | 11 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | homalt | 91.6667 | 84.6154 | 100.0000 | 54.1667 | 11 | 2 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 86.5854 | 11 | 1 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 94.5000 | 11 | 4 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 94.9772 | 11 | 4 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | decoy | homalt | 48.8889 | 33.3333 | 91.6667 | 99.7340 | 1 | 2 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 50.0000 | 94.2257 | 0 | 0 | 11 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.2257 | 0 | 0 | 11 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 39.2857 | 93.7639 | 0 | 0 | 11 | 17 | 14 | 82.3529 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 39.2857 | 92.8021 | 0 | 0 | 11 | 17 | 6 | 35.2941 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 24.4444 | 96.6518 | 0 | 0 | 11 | 34 | 22 | 64.7059 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 32.3529 | 97.2222 | 0 | 0 | 11 | 23 | 18 | 78.2609 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0938 | 10 | 0 | 10 | 0 | 0 | ||
| egarrison-hhga | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.7320 | 5 | 4 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 76.9231 | 96.7500 | 0 | 0 | 10 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 52.6316 | 93.9297 | 0 | 0 | 10 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 76.9231 | 96.8370 | 0 | 0 | 10 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 10 | 10 | 7 | 70.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9648 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4654 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6891 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6987 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | hetalt | 51.2821 | 34.4828 | 100.0000 | 93.5065 | 10 | 19 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.5161 | 58.8235 | 71.4286 | 94.8529 | 10 | 7 | 10 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9717 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5157 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9353 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5045 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9440 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.3333 | 10 | 16 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.3642 | 92.3077 | 55.5556 | 70.4918 | 12 | 1 | 10 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 10 | 5 | 10 | 0 | 0 | ||