PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43201-43250 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 73.3333 | 57.8947 | 100.0000 | 93.6047 | 11 | 8 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 73.3333 | 57.8947 | 100.0000 | 94.3299 | 11 | 8 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.5000 | 11 | 9 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 98.6453 | 11 | 33 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.8261 | 31.4286 | 100.0000 | 96.1938 | 11 | 24 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.4815 | 73.3333 | 91.6667 | 96.9773 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9854 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9854 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 64.7059 | 64.7059 | 64.7059 | 99.6822 | 11 | 6 | 11 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | homalt | 46.3972 | 38.7097 | 57.8947 | 75.6410 | 12 | 19 | 11 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8718 | 11 | 0 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.9444 | 11 | 4 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 97.0027 | 11 | 4 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.0969 | 11 | 0 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 96.9388 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 71.7949 | 11 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 90.4348 | 11 | 1 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 75.8621 | 73.3333 | 78.5714 | 96.3731 | 11 | 4 | 11 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.4444 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6795 | 11 | 0 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7164 | 11 | 4 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.7930 | 11 | 4 | 11 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.1938 | 11 | 0 | 11 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 66.6667 | 11 | 1 | 11 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 95.0413 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 88.5417 | 11 | 1 | 11 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.0594 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.6188 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 81.6667 | 11 | 1 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.4444 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 95.2381 | 11 | 9 | 11 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 62.8571 | 55.0000 | 73.3333 | 99.5745 | 11 | 9 | 11 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.4815 | 73.3333 | 91.6667 | 98.2609 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.7801 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.0000 | 91.6667 | 84.6154 | 98.9185 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 16.3569 | 13.3333 | 21.1538 | 62.5899 | 10 | 65 | 11 | 41 | 40 | 97.5610 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.1825 | 76.9231 | 21.1538 | 59.0551 | 10 | 3 | 11 | 41 | 40 | 97.5610 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 97.0976 | 11 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7456 | 10 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 52.1739 | 11 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 83.8235 | 11 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m0_e0 | * | 84.6154 | 73.3333 | 100.0000 | 91.9118 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 88.1188 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 89.3805 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.2247 | 90.0000 | 84.6154 | 96.3483 | 9 | 1 | 11 | 2 | 0 | 0.0000 | |