PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42801-42850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | het | 82.7586 | 70.5882 | 100.0000 | 90.6977 | 12 | 5 | 12 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.5385 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 97.8003 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 96.5699 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.1429 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7273 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7273 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7302 | 12 | 3 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.7377 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.0986 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4156 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4156 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.0986 | 12 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.4477 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 75.0000 | 85.7143 | 99.8799 | 12 | 4 | 12 | 2 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e1 | hetalt | 55.8140 | 38.7097 | 100.0000 | 93.1034 | 12 | 19 | 12 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4334 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 80.3279 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7302 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 93.6275 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.8188 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 63.1579 | 54.5455 | 75.0000 | 88.2353 | 6 | 5 | 12 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 80.9524 | 12 | 18 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 89.3805 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.0000 | 92.3077 | 100.0000 | 20.0000 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e0 | het | 40.6780 | 26.0870 | 92.3077 | 96.5333 | 12 | 34 | 12 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 79.3103 | 12 | 16 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e1 | homalt | 58.5366 | 41.3793 | 100.0000 | 80.0000 | 12 | 17 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 58.6207 | 12 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 29.4118 | 11 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | * | 88.8889 | 80.0000 | 100.0000 | 94.3128 | 12 | 3 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 85.7143 | 75.0000 | 100.0000 | 94.7137 | 12 | 4 | 12 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 93.4673 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 77.1930 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 93.9227 | 0 | 0 | 12 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 92.3077 | 95.2899 | 0 | 0 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 61.5385 | 46.1538 | 92.3077 | 75.4717 | 12 | 14 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 61.5385 | 46.1538 | 92.3077 | 75.4717 | 12 | 14 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.1565 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.2162 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 92.3977 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.7500 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 51.0638 | 92.3077 | 35.2941 | 68.5185 | 12 | 1 | 12 | 22 | 19 | 86.3636 | |