PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42751-42800 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.0730 | 70.5882 | 1.5707 | 75.7691 | 12 | 5 | 12 | 752 | 2 | 0.2660 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 36.1644 | 29.7297 | 46.1538 | 94.8310 | 11 | 26 | 12 | 14 | 4 | 28.5714 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | hetalt | 21.6216 | 12.1212 | 100.0000 | 96.0265 | 12 | 87 | 12 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 10.5305 | 5.9140 | 48.0000 | 69.1358 | 11 | 175 | 12 | 13 | 2 | 15.3846 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 13.4283 | 7.2848 | 85.7143 | 44.0000 | 11 | 140 | 12 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 66.6667 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 33.3333 | 12 | 3 | 12 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5714 | 70.5882 | 66.6667 | 94.3750 | 12 | 5 | 12 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.0000 | 75.0000 | 75.0000 | 97.8349 | 12 | 4 | 12 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.7768 | 12 | 8 | 12 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 68.5714 | 52.1739 | 100.0000 | 94.6188 | 12 | 11 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_siren | hetalt | 64.3533 | 51.5152 | 85.7143 | 76.2712 | 51 | 48 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 47.5921 | 56.0000 | 41.3793 | 69.7917 | 14 | 11 | 12 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 82.0513 | 84.2105 | 80.0000 | 94.5848 | 16 | 3 | 12 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 82.0513 | 84.2105 | 80.0000 | 94.6043 | 16 | 3 | 12 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 48.7085 | 36.0656 | 75.0000 | 57.8947 | 22 | 39 | 12 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.1073 | 48.0769 | 54.5455 | 60.7143 | 25 | 27 | 12 | 10 | 8 | 80.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | hetalt | 80.0000 | 85.7143 | 75.0000 | 81.3953 | 12 | 2 | 12 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 42.8571 | 46.1538 | 40.0000 | 98.9510 | 12 | 14 | 12 | 18 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.7143 | 92.0904 | 0 | 0 | 12 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2617 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5418 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.7619 | 0 | 0 | 12 | 36 | 7 | 19.4444 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.0000 | 93.3921 | 0 | 0 | 12 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.2500 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.2500 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.5385 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 40.0000 | 10 | 2 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 93.7824 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.0000 | 92.3077 | 63.1579 | 85.2713 | 12 | 1 | 12 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 96.8668 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8462 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 81.6901 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 85.7143 | 80.0000 | 92.3077 | 83.5443 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 85.7143 | 80.0000 | 92.3077 | 83.7500 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | het | 80.0000 | 75.0000 | 85.7143 | 93.7500 | 12 | 4 | 12 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.2500 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9774 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9774 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.2500 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.7586 | 70.5882 | 100.0000 | 97.2158 | 12 | 5 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.0355 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6835 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 84.3373 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 92.2581 | 12 | 2 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.2409 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 97.7199 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |