PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42701-42750 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7143 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 70.0000 | 11 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.7059 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 91.6667 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 52.0000 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.1639 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 67.7419 | 56.0000 | 85.7143 | 83.1325 | 14 | 11 | 12 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 71.4894 | 58.3333 | 92.3077 | 78.3333 | 14 | 10 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9565 | 76.9231 | 100.0000 | 70.0000 | 10 | 3 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 77.4194 | 66.6667 | 92.3077 | 69.0476 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 67.5676 | 12 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.7931 | 12 | 4 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.1818 | 12 | 3 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8898 | 10 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.7742 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.3077 | 95.7377 | 0 | 0 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.3077 | 94.9020 | 0 | 0 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.4497 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.8085 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.8912 | 0 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.4729 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6759 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 85.7143 | 80.0000 | 92.3077 | 99.2499 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.6292 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7711 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7711 | 12 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | homalt | 59.7285 | 45.8333 | 85.7143 | 82.2785 | 11 | 13 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | homalt | 61.5385 | 46.1538 | 92.3077 | 85.2273 | 12 | 14 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 37 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 16 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 29.6296 | 18.1818 | 80.0000 | 78.5714 | 2 | 9 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 38.0952 | 25.0000 | 80.0000 | 78.2609 | 2 | 6 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 22.9299 | 13.2353 | 85.7143 | 26.3158 | 9 | 59 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 7.2838 | 3.7915 | 92.3077 | 60.6061 | 8 | 203 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 8.1356 | 4.2553 | 92.3077 | 59.3750 | 8 | 180 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 21.2121 | 11.8644 | 100.0000 | 33.3333 | 7 | 52 | 12 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 80.0000 | 70.5882 | 97.4627 | 12 | 3 | 12 | 5 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.8571 | 13.0435 | 92.3077 | 56.6667 | 12 | 80 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 25.0000 | 14.4578 | 92.3077 | 18.7500 | 12 | 71 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.9831 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 14.2857 | 100.0000 | 7.6923 | 80.7169 | 12 | 0 | 12 | 144 | 7 | 4.8611 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 14.2857 | 100.0000 | 7.6923 | 80.7169 | 12 | 0 | 12 | 144 | 7 | 4.8611 | |