PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42651-42700 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.3684 | 12 | 1 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 12 | 0 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 92.0245 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 75.0000 | 94.7541 | 0 | 0 | 12 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | * | 61.5385 | 100.0000 | 44.4444 | 64.4737 | 12 | 0 | 12 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.5505 | 84.4177 | 100.0000 | 89.0909 | 5813 | 1073 | 12 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 83.8710 | 72.2222 | 100.0000 | 73.9130 | 13 | 5 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.8621 | 61.1111 | 100.0000 | 85.3659 | 11 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.6552 | 12 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.9160 | 12 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 75.0000 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 78.5714 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 70.5882 | 54.5455 | 100.0000 | 79.3103 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 75.0000 | 60.0000 | 96.9605 | 12 | 4 | 12 | 8 | 4 | 50.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 72.0930 | 12 | 18 | 12 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.6087 | 12 | 1 | 12 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.3659 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.3659 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.6087 | 12 | 1 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4138 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 68.5714 | 52.1739 | 100.0000 | 94.6188 | 12 | 11 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 74.4681 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 84.4156 | 9 | 2 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.3077 | 92.3077 | 92.3077 | 48.0000 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8621 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.1292 | 12 | 1 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.3077 | 92.3077 | 92.3077 | 66.6667 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 36.8421 | 11 | 1 | 12 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.3966 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 67.4419 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.3390 | 13.7931 | 38.7097 | 86.2222 | 12 | 75 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 39.6992 | 40.7407 | 38.7097 | 83.7696 | 11 | 16 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.7273 | 75.0000 | 70.5882 | 76.0563 | 12 | 4 | 12 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | het | 70.5882 | 66.6667 | 75.0000 | 79.7468 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 70.5882 | 66.6667 | 75.0000 | 82.9787 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | het | 70.5882 | 66.6667 | 75.0000 | 83.1579 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 33.3333 | 12 | 3 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 53.3333 | 44.4444 | 66.6667 | 94.6429 | 12 | 15 | 12 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.6197 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.3077 | 95.7096 | 0 | 0 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.0784 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.5015 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.5714 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.5689 | 0 | 0 | 12 | 3 | 1 | 33.3333 | |