PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41501-41550 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 92.6267 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.7742 | 100.0000 | 93.7500 | 92.8571 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e1 | het | 96.7742 | 93.7500 | 100.0000 | 95.8333 | 15 | 1 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.1461 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.1461 | 15 | 0 | 15 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | HG002complexvar | het | 56.6038 | 50.0000 | 65.2174 | 92.6045 | 2 | 2 | 15 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 15.7895 | 95.5649 | 0 | 0 | 15 | 80 | 22 | 27.5000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.7368 | 95.1157 | 0 | 0 | 15 | 61 | 10 | 16.3934 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 33.7553 | 24.2424 | 55.5556 | 91.2903 | 16 | 50 | 15 | 12 | 2 | 16.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 37.0370 | 24.5902 | 75.0000 | 90.9910 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 37.0370 | 24.5902 | 75.0000 | 91.0314 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.5932 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9459 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8754 | 15 | 1 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 88.3721 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 90.5063 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 90.5063 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 93.7500 | 96.7480 | 0 | 0 | 15 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5652 | 0 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 95.8746 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 96.2687 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 71.4286 | 94.5596 | 0 | 0 | 15 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | * | 88.2353 | 83.3333 | 93.7500 | 96.6736 | 15 | 3 | 15 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 37.9747 | 31.9149 | 46.8750 | 76.2963 | 15 | 32 | 15 | 17 | 17 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | homalt | 84.8485 | 73.6842 | 100.0000 | 82.3529 | 14 | 5 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.3333 | 75.0000 | 93.7500 | 99.9211 | 12 | 4 | 15 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 91.5254 | 0 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 74.3034 | 61.5385 | 93.7500 | 78.0822 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 74.3034 | 61.5385 | 93.7500 | 81.3953 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 74.3034 | 61.5385 | 93.7500 | 81.6092 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | homalt | 78.9474 | 71.4286 | 88.2353 | 70.6897 | 15 | 6 | 15 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.1111 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.3721 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8060 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.1163 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0851 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 100.0000 | 95.3560 | 0 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.8874 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.9227 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.5469 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 88.5496 | 15 | 0 | 15 | 0 | 0 | ||