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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
4101-4150 / 86044 show all
jpowers-varprowlSNPtimap_l100_m2_e0homalt
99.4381
99.0770
99.8019
64.9829
18140169181403628
77.7778
jlack-gatkSNP*func_cds*
99.3020
99.9614
98.6513
31.6355
181437181402481
0.4032
hfeng-pmm1SNP*func_cds*
99.9366
99.9614
99.9119
23.2953
18143718140160
0.0000
hfeng-pmm3SNPtimap_l125_m1_e0het
99.4436
99.3211
99.5663
71.0299
1814212418138798
10.1266
ghariani-varprowlSNPtimap_l100_m2_e0homalt
99.4217
99.0660
99.7800
63.1898
18138171181384028
70.0000
rpoplin-dv42SNP*func_cds*
99.9366
99.9449
99.9284
24.7263
181401018137133
23.0769
gduggal-snapfbINDELI1_5HG002complexvarhet
93.2070
95.4203
91.0940
55.8992
17356833181351773467
26.3395
dgrover-gatkSNPtimap_l125_m1_e0het
99.2150
99.2992
99.1308
75.9575
181381281813415933
20.7547
ltrigg-rtg1SNP*func_cds*
99.6647
99.8898
99.4405
22.8252
1813020181291021
0.9804
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2011
99.7140
98.6934
41.6778
1813152181282403
1.2500
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.1654
99.5545
98.7794
37.2444
1810281181272247
3.1250
ltrigg-rtg2SNP*func_cds*
99.6865
99.8678
99.5059
22.3605
181262418125901
1.1111
hfeng-pmm2SNPtimap_l125_m1_e0het
99.1603
99.2500
99.0708
74.2780
181291371812517014
8.2353
ghariani-varprowlSNP*func_cds*
99.5441
99.8512
99.2389
30.8362
18123271812313914
10.0719
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
jmaeng-gatkSNP*func_cds*
99.4513
99.8678
99.0382
31.9360
1812624181231761
0.5682
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.3553
99.7468
97.0021
67.1820
181204618120560541
96.6071
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.3553
99.7468
97.0021
67.1820
181204618120560541
96.6071
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3937
99.6425
99.1462
42.0410
1811865181151562
1.2821
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
egarrison-hhgaINDEL*HG002compoundhethetalt
84.8570
74.1223
99.2275
55.5672
18664651618112141123
87.2340
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
ckim-gatkINDELI1_5HG002complexvarhet
99.7716
99.6866
99.8566
58.0913
1813257181102613
50.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6356
99.6862
97.6069
67.4063
181095718109444421
94.8198
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6356
99.6862
97.6069
67.4063
181095718109444421
94.8198
dgrover-gatkINDELI1_5HG002complexvarhet
99.7798
99.6646
99.8952
58.2404
181286118108199
47.3684
bgallagher-sentieonINDELI1_5HG002complexvarhet
99.7743
99.6591
99.8897
57.8575
1812762181082010
50.0000
astatham-gatkSNP*func_cds*
99.8621
99.7796
99.9448
24.2600
181104018107100
0.0000
jlack-gatkSNPtimap_l100_m2_e0homalt
99.3934
98.8858
99.9062
60.1223
18105204181051715
88.2353
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1022
99.6257
98.5842
64.7104
180986818104260243
93.4615
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1022
99.6257
98.5842
64.7104
180986818104260243
93.4615
gduggal-snapfbSNP*lowcmp_SimpleRepeat_quadTR_11to50*
90.7849
98.9826
83.8412
55.2905
17998185181033489157
4.4999
ckim-vqsrSNP*func_cds*
99.7574
99.7080
99.8069
31.6969
180975318094350
0.0000
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.5798
99.2191
94.0773
54.5022
18041142180921139144
12.6427
gduggal-snapvardSNPtimap_l125_m2_e0het
91.7410
96.5618
87.3786
82.2821
18227649180902613206
7.8837
ckim-dragenSNPtimap_l125_m1_e0het
97.7308
99.0200
96.4747
76.6075
180871791808966163
9.5310
jlack-gatkSNPtimap_l125_m1_e0het
95.2550
99.0419
91.7470
82.2690
18091175180871627140
8.6048
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
86.2517
96.2231
78.1528
59.6097
171466731808350554861
96.1622
jmaeng-gatkINDELI1_5HG002complexvarhet
99.6695
99.5052
99.8344
58.2792
1809990180813014
46.6667
jlack-gatkINDELI1_5HG002complexvarhet
99.5954
99.5052
99.6857
57.8787
1809990180805728
49.1228
rpoplin-dv42SNPtimap_l125_m1_e0het
99.1441
98.9434
99.3457
70.2153
180731931806911974
62.1849
asubramanian-gatkSNP*func_cds*
99.6470
99.5537
99.7405
30.0602
180698118066471
2.1277