PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41201-41250 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2835 | 16 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 16 | 0 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | * | 65.5738 | 55.5556 | 80.0000 | 91.3420 | 15 | 12 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | * | 64.1711 | 53.5714 | 80.0000 | 91.5612 | 15 | 13 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | * | 78.6127 | 77.2727 | 80.0000 | 96.3636 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | * | 78.6127 | 77.2727 | 80.0000 | 96.4413 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 48.2759 | 31.8182 | 100.0000 | 91.5730 | 14 | 30 | 15 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | * | 65.2174 | 55.5556 | 78.9474 | 91.3242 | 15 | 12 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D1_5 | tech_badpromoters | * | 88.2353 | 78.9474 | 100.0000 | 40.0000 | 15 | 4 | 15 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.9091 | 6.2500 | 42.8571 | 61.9565 | 12 | 180 | 15 | 20 | 16 | 80.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 29.4118 | 42.8571 | 22.3881 | 56.2092 | 15 | 20 | 15 | 52 | 24 | 46.1538 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 21.8978 | 16.8539 | 31.2500 | 56.7568 | 15 | 74 | 15 | 33 | 19 | 57.5758 | |
| bgallagher-sentieon | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m0_e0 | het | 90.9091 | 88.2353 | 93.7500 | 93.2203 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 15 | 0 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 15 | 0 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9016 | 15 | 0 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8571 | 15 | 1 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 15 | 0 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 15 | 0 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.3674 | 12 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 93.7500 | 88.2353 | 100.0000 | 99.5292 | 15 | 2 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9052 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9349 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 95.0147 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 95.7393 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 95.7500 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 87.6827 | 82.3529 | 93.7500 | 94.3060 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 76.9231 | 100.0000 | 62.5000 | 94.2721 | 15 | 0 | 15 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | hetalt | 51.7241 | 34.8837 | 100.0000 | 90.7407 | 15 | 28 | 15 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 93.7500 | 78.9474 | 97.3501 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | homalt | 55.0459 | 66.6667 | 46.8750 | 67.3469 | 14 | 7 | 15 | 17 | 16 | 94.1176 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.9231 | 75.0000 | 78.9474 | 96.1538 | 12 | 4 | 15 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9016 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8510 | 15 | 1 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 96.7742 | 93.7500 | 100.0000 | 99.8973 | 15 | 1 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6636 | 15 | 0 | 15 | 0 | 0 | ||