PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41051-41100 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 17.3913 | 86.6667 | 0 | 0 | 16 | 76 | 11 | 14.4737 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 72.7273 | 84.2105 | 64.0000 | 97.6460 | 16 | 3 | 16 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 86.4865 | 94.1176 | 80.0000 | 98.5653 | 16 | 1 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.8094 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 98.5735 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 88.8889 | 100.0000 | 80.0000 | 97.8237 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | homalt | 64.0000 | 47.0588 | 100.0000 | 97.5309 | 16 | 18 | 16 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | * | het | 41.5584 | 88.8889 | 27.1186 | 82.3353 | 8 | 1 | 16 | 43 | 3 | 6.9767 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | homalt | 3.3072 | 70.8333 | 1.6931 | 58.2597 | 17 | 7 | 16 | 929 | 928 | 99.8924 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 1.2251 | 0.6250 | 30.7692 | 75.3555 | 3 | 477 | 16 | 36 | 11 | 30.5556 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 3.5346 | 1.8750 | 30.7692 | 75.2381 | 3 | 157 | 16 | 36 | 11 | 30.5556 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | het | 74.4186 | 100.0000 | 59.2593 | 91.4013 | 4 | 0 | 16 | 11 | 8 | 72.7273 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 20.8696 | 12.0000 | 80.0000 | 51.2195 | 15 | 110 | 16 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | hetalt | 22.4330 | 13.6000 | 64.0000 | 98.2970 | 17 | 108 | 16 | 9 | 5 | 55.5556 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | hetalt | 21.2999 | 12.8788 | 61.5385 | 98.2562 | 17 | 115 | 16 | 10 | 5 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | * | 42.7650 | 28.1553 | 88.8889 | 96.7332 | 29 | 74 | 16 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | het | 47.3921 | 35.9375 | 69.5652 | 94.6882 | 23 | 41 | 16 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 99.2416 | 16 | 8 | 16 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | * | 88.8889 | 88.8889 | 88.8889 | 97.3174 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 39.0244 | 34.0426 | 45.7143 | 78.5276 | 16 | 31 | 16 | 19 | 18 | 94.7368 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 66.6667 | 61.5385 | 72.7273 | 84.7222 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 66.6667 | 61.5385 | 72.7273 | 86.8263 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 66.6667 | 61.5385 | 72.7273 | 86.9048 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8870 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 79.0123 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.6923 | 15 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7468 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7468 | 16 | 0 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 96.9697 | 94.1176 | 100.0000 | 99.4528 | 16 | 1 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 86.4865 | 94.1176 | 80.0000 | 97.4843 | 16 | 1 | 16 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1061 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 97.5124 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.1338 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 82.2917 | 16 | 3 | 16 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0225 | 16 | 0 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 82.2917 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 86.2069 | 15 | 1 | 16 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.7622 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 91.4286 | 100.0000 | 84.2105 | 95.4976 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 91.4286 | 100.0000 | 84.2105 | 95.5814 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 80.2326 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.9699 | 15 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8696 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.7965 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |