PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40951-41000 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | homalt | 71.1111 | 66.6667 | 76.1905 | 90.5405 | 16 | 8 | 16 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | homalt | 76.1905 | 76.1905 | 76.1905 | 90.2326 | 16 | 5 | 16 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.8288 | 17.3913 | 84.2105 | 81.9048 | 16 | 76 | 16 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 23.2343 | 13.2530 | 94.1176 | 59.5238 | 11 | 72 | 16 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | * | 57.9710 | 45.4545 | 80.0000 | 87.8049 | 15 | 18 | 16 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 96.2704 | 19 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.9091 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 91.0526 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.9474 | 14 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.9697 | 100.0000 | 94.1176 | 78.4810 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.4286 | 100.0000 | 84.2105 | 82.0755 | 15 | 0 | 16 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | het | 94.1176 | 94.1176 | 94.1176 | 91.3706 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m1_e0 | hetalt | 87.3239 | 77.5000 | 100.0000 | 92.6941 | 31 | 9 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.4186 | 80.0000 | 69.5652 | 99.3068 | 16 | 4 | 16 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | hetalt | 66.6667 | 51.6129 | 94.1176 | 83.1683 | 16 | 15 | 16 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.4903 | 70.1987 | 100.0000 | 69.8113 | 106 | 45 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 61.0354 | 58.3333 | 64.0000 | 82.6389 | 7 | 5 | 16 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 77.7778 | 63.6364 | 100.0000 | 81.6092 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.1176 | 94.1176 | 94.1176 | 99.2682 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8747 | 16 | 0 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.1176 | 94.1176 | 94.1176 | 90.5556 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.4286 | 88.8889 | 94.1176 | 90.7609 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 72.8814 | 16 | 0 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 65.9574 | 14 | 1 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 79.7784 | 69.2308 | 94.1176 | 78.4810 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 79.7784 | 69.2308 | 94.1176 | 81.1111 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 79.7784 | 69.2308 | 94.1176 | 81.1111 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.0851 | 59.2593 | 80.0000 | 96.0239 | 16 | 11 | 16 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 67.2414 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 73.6111 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e1 | hetalt | 74.4186 | 66.6667 | 84.2105 | 73.9726 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 96.9697 | 94.1176 | 100.0000 | 99.4940 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 12 | 0 | 16 | 0 | 0 | ||