PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40901-40950 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 91.7476 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 84.2105 | 94.1176 | 92.0188 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 61.5385 | 94.3355 | 0 | 0 | 16 | 10 | 3 | 30.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 76.1905 | 86.4516 | 0 | 0 | 16 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 32.0000 | 94.1995 | 0 | 0 | 16 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 39.0244 | 96.1027 | 0 | 0 | 16 | 25 | 3 | 12.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 82.0513 | 69.5652 | 100.0000 | 80.4878 | 16 | 7 | 16 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 80.0000 | 99.9773 | 0 | 0 | 16 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | homalt | 62.0296 | 70.8333 | 55.1724 | 55.3846 | 17 | 7 | 16 | 13 | 10 | 76.9231 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.0851 | 94.1176 | 53.3333 | 91.3295 | 16 | 1 | 16 | 14 | 7 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | het | 76.1905 | 100.0000 | 61.5385 | 94.4444 | 16 | 0 | 16 | 10 | 4 | 40.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | hetalt | 76.4505 | 70.0000 | 84.2105 | 94.8925 | 28 | 12 | 16 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | * | 74.4186 | 59.2593 | 100.0000 | 97.0909 | 16 | 11 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | * | 74.4186 | 59.2593 | 100.0000 | 97.3597 | 16 | 11 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | * | 72.7273 | 57.1429 | 100.0000 | 97.4026 | 16 | 12 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 51.6129 | 95.8667 | 0 | 0 | 16 | 15 | 12 | 80.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 49.2308 | 33.3333 | 94.1176 | 77.0270 | 4 | 8 | 16 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 84.9057 | 9 | 10 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 86.6667 | 9 | 10 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 62.0690 | 45.0000 | 100.0000 | 87.0968 | 9 | 11 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 52.9412 | 15 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 92.6606 | 6 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 6 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 84.2105 | 94.1538 | 0 | 0 | 16 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | hetalt | 90.4110 | 82.5000 | 100.0000 | 95.1952 | 33 | 7 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | segdup | hetalt | 94.1742 | 94.2308 | 94.1176 | 97.6902 | 49 | 3 | 16 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 96.2306 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 24.6154 | 14.8148 | 72.7273 | 60.7143 | 16 | 92 | 16 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | homalt | 91.4286 | 84.2105 | 100.0000 | 82.0225 | 16 | 3 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_siren | hetalt | 87.5000 | 77.7778 | 100.0000 | 84.0000 | 56 | 16 | 16 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.3774 | 59.2593 | 61.5385 | 97.8369 | 16 | 11 | 16 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 40.1003 | 26.3158 | 84.2105 | 99.8551 | 15 | 42 | 16 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m1_e0 | homalt | 76.1905 | 61.5385 | 100.0000 | 90.5325 | 16 | 10 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 78.0488 | 64.0000 | 100.0000 | 72.8814 | 16 | 9 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0513 | 69.5652 | 100.0000 | 20.0000 | 16 | 7 | 16 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | hetalt | 71.1111 | 55.1724 | 100.0000 | 88.8889 | 16 | 13 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 69.5652 | 96.0684 | 0 | 0 | 16 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 66.6667 | 95.9664 | 0 | 0 | 16 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 80.0000 | 90.0498 | 0 | 0 | 16 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 44.8276 | 19 | 0 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 65.3061 | 72.7273 | 59.2593 | 88.7967 | 8 | 3 | 16 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 84.2105 | 88.8889 | 80.0000 | 89.9497 | 8 | 1 | 16 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 80.0000 | 88.8889 | 72.7273 | 89.8618 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 80.0000 | 88.8889 | 72.7273 | 89.9083 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | * | 46.3768 | 34.7826 | 69.5652 | 93.9153 | 16 | 30 | 16 | 7 | 6 | 85.7143 | |