PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40801-40850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 97.0779 | 0 | 0 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 17 | 0 | 17 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.2857 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.1351 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 95.1482 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4107 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.3865 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.8919 | 94.4444 | 89.4737 | 97.4255 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.7778 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1452 | 17 | 0 | 17 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | segdup | * | 48.3031 | 38.2979 | 65.3846 | 88.6463 | 18 | 29 | 17 | 9 | 5 | 55.5556 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | * | 61.4458 | 60.0000 | 62.9630 | 91.0299 | 15 | 10 | 17 | 10 | 2 | 20.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | * | 61.4458 | 60.0000 | 62.9630 | 92.1283 | 15 | 10 | 17 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4518 | 17 | 0 | 17 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.1971 | 86.9565 | 89.4737 | 77.1084 | 20 | 3 | 17 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.4067 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.1182 | 94.7368 | 77.2727 | 96.5300 | 18 | 1 | 17 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e0 | * | 91.8919 | 100.0000 | 85.0000 | 97.0631 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e1 | * | 89.4737 | 94.4444 | 85.0000 | 97.1098 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 86.1789 | 17 | 2 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 87.6812 | 17 | 2 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 88.1119 | 17 | 3 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 51.4286 | 17 | 0 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8628 | 17 | 0 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 13 | 0 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 76.7123 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.2683 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 82.2917 | 17 | 3 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 66.0000 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 67.3077 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.1683 | 17 | 2 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.1176 | 88.8889 | 100.0000 | 74.2424 | 16 | 2 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 91.8919 | 100.0000 | 85.0000 | 94.2029 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8406 | 17 | 0 | 17 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 80.9524 | 99.7647 | 0 | 0 | 17 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 97.5248 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.8604 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.8919 | 94.4444 | 89.4737 | 97.9006 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 51.4286 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 95.6522 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 95.6720 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9558 | 16 | 0 | 17 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0612 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9524 | 70.8333 | 94.4444 | 73.9130 | 17 | 7 | 17 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | ti | map_l100_m1_e0 | hetalt | 73.9130 | 58.6207 | 100.0000 | 74.2424 | 17 | 12 | 17 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.4229 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | * | 94.4444 | 89.4737 | 100.0000 | 32.0000 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 71.6186 | 79.1667 | 65.3846 | 43.4783 | 19 | 5 | 17 | 9 | 9 | 100.0000 | |