PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40651-40700 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | het | 47.0393 | 35.2113 | 70.8333 | 94.8608 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | * | 46.1771 | 32.9268 | 77.2727 | 96.4573 | 27 | 55 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | * | 45.0221 | 31.7647 | 77.2727 | 96.4912 | 27 | 58 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.2378 | 37.7049 | 85.0000 | 51.2195 | 23 | 38 | 17 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.4444 | 100.0000 | 89.4737 | 99.3012 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | het | 84.4371 | 88.2353 | 80.9524 | 75.0000 | 15 | 2 | 17 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | * | 77.2727 | 68.0000 | 89.4737 | 89.3258 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | * | 77.2727 | 68.0000 | 89.4737 | 90.9091 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 73.9130 | 95.0108 | 0 | 0 | 17 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 77.2727 | 81.3559 | 0 | 0 | 17 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 92.9961 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 45.4545 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | * | 94.4444 | 94.4444 | 94.4444 | 96.3190 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0972 | 17 | 0 | 17 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.0540 | 17 | 10 | 17 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.2000 | 33 | 9 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m2_e1 | hetalt | 86.8421 | 76.7442 | 100.0000 | 93.2806 | 33 | 10 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 37.9310 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1429 | 100.0000 | 94.4444 | 80.6452 | 16 | 0 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | * | 70.8333 | 65.3846 | 77.2727 | 89.0000 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | * | 70.8333 | 65.3846 | 77.2727 | 91.2698 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | * | 70.8333 | 65.3846 | 77.2727 | 91.4062 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | homalt | 53.1250 | 38.6364 | 85.0000 | 92.5094 | 17 | 27 | 17 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9564 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.9048 | 0 | 0 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 85.4701 | 17 | 2 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.7698 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 88.5135 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.8158 | 18 | 2 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 17 | 0 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 78.1609 | 66.6667 | 94.4444 | 77.5000 | 18 | 9 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 85.9504 | 18 | 1 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | hetalt | 66.6667 | 51.5152 | 94.4444 | 86.6667 | 17 | 16 | 17 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 51.5152 | 34.6939 | 100.0000 | 32.0000 | 17 | 32 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 97.6127 | 0 | 0 | 17 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 48.4848 | 17 | 0 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_siren | homalt | 69.6721 | 71.4286 | 68.0000 | 85.3801 | 15 | 6 | 17 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.3333 | 77.7778 | 80.9524 | 75.8621 | 21 | 6 | 17 | 4 | 4 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1781 | 17 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.2340 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 96.1538 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 89.4737 | 100.0000 | 80.9524 | 96.3093 | 17 | 0 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 87.1795 | 94.4444 | 80.9524 | 96.3855 | 17 | 1 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 85.3448 | 17 | 2 | 17 | 0 | 0 | ||