PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40501-40550 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 89.4737 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.2152 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.2152 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.3077 | 90.0000 | 94.7368 | 91.8103 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.3077 | 90.0000 | 94.7368 | 92.4901 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.3077 | 90.0000 | 94.7368 | 92.6357 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 45.4545 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.1743 | 18 | 0 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 91.9643 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.1397 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 18 | 9 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m1_e0 | * | 50.7042 | 33.9623 | 100.0000 | 94.6903 | 18 | 35 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | * | 50.7042 | 33.9623 | 100.0000 | 95.3368 | 18 | 35 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e1 | * | 50.7042 | 33.9623 | 100.0000 | 95.4774 | 18 | 35 | 18 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 75.3425 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9821 | 18 | 3 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 83.3333 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.2595 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.6712 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.0000 | 18 | 2 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 18 | 0 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 81.7308 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 85.2459 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.0504 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.4126 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.4749 | 89.4737 | 81.8182 | 90.4348 | 17 | 2 | 18 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | * | 94.7368 | 94.7368 | 94.7368 | 45.7143 | 18 | 1 | 18 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 90.6736 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.7192 | 73.8095 | 64.2857 | 97.6068 | 31 | 11 | 18 | 10 | 2 | 20.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.0000 | 81.8182 | 64.2857 | 67.4419 | 18 | 4 | 18 | 10 | 8 | 80.0000 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | * | 54.6638 | 58.3333 | 51.4286 | 98.2952 | 14 | 10 | 18 | 17 | 10 | 58.8235 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | * | 60.6316 | 59.2593 | 62.0690 | 91.8310 | 16 | 11 | 18 | 11 | 3 | 27.2727 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.8983 | 80.9524 | 51.4286 | 99.9273 | 17 | 4 | 18 | 17 | 13 | 76.4706 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | homalt | 64.2857 | 60.0000 | 69.2308 | 98.0168 | 15 | 10 | 18 | 8 | 8 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 55.3846 | 42.8571 | 78.2609 | 99.2474 | 18 | 24 | 18 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 88.7640 | 18 | 6 | 18 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |