PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40451-40500 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.7551 | 18 | 2 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.6471 | 18 | 0 | 18 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 81.1881 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.9732 | 18 | 0 | 18 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7959 | 81.4815 | 100.0000 | 90.4762 | 22 | 5 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.5665 | 18 | 3 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.1207 | 18 | 3 | 18 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | het | 87.8049 | 90.0000 | 85.7143 | 97.5917 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | het | 87.8049 | 90.0000 | 85.7143 | 97.6770 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | het | 87.8049 | 90.0000 | 85.7143 | 97.6923 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 89.4737 | 80.9524 | 100.0000 | 99.9544 | 17 | 4 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 94.7368 | 95.4545 | 0 | 0 | 18 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4286 | 0 | 0 | 18 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.0645 | 48.6486 | 72.0000 | 74.2268 | 18 | 19 | 18 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | het | 76.5957 | 75.0000 | 78.2609 | 93.5393 | 18 | 6 | 18 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 56.2500 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 17.7156 | 10.2151 | 66.6667 | 89.1129 | 19 | 167 | 18 | 9 | 9 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.2672 | 54.2857 | 81.8182 | 88.5417 | 19 | 16 | 18 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 65.4545 | 54.5455 | 81.8182 | 90.6780 | 18 | 15 | 18 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 94.7368 | 95.5504 | 0 | 0 | 18 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5510 | 0 | 0 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.2500 | 17 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 30.7692 | 18 | 1 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0698 | 65.3846 | 100.0000 | 85.9375 | 17 | 9 | 18 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | * | 58.5732 | 59.0909 | 58.0645 | 94.8845 | 13 | 9 | 18 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 2.1951 | 1.1236 | 47.3684 | 61.6162 | 1 | 88 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 3.6290 | 1.8868 | 47.3684 | 61.2245 | 1 | 52 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 36.7347 | 63.4328 | 0 | 414 | 18 | 31 | 12 | 38.7097 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 37.5000 | 63.6364 | 0 | 106 | 18 | 30 | 11 | 36.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 13.7405 | 7.6923 | 64.2857 | 76.0684 | 2 | 24 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 18.9474 | 11.1111 | 64.2857 | 75.6522 | 2 | 16 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | het | 69.8061 | 87.5000 | 58.0645 | 43.6364 | 21 | 3 | 18 | 13 | 12 | 92.3077 | |
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 12.1622 | 90.0738 | 0 | 0 | 18 | 130 | 4 | 3.0769 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 60.0000 | 94.2857 | 0 | 0 | 18 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 60.3774 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.1449 | 70.2703 | 64.2857 | 89.1892 | 26 | 11 | 18 | 10 | 2 | 20.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.3138 | 62.5000 | 94.7368 | 94.7368 | 30 | 18 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 72.5806 | 58.8235 | 94.7368 | 94.8087 | 30 | 21 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | homalt | 78.2609 | 69.2308 | 90.0000 | 92.1569 | 18 | 8 | 18 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.6355 | 18 | 0 | 18 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | homalt | 90.0000 | 85.7143 | 94.7368 | 76.8293 | 18 | 3 | 18 | 1 | 1 | 100.0000 | |