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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
4001-4050 / 86044 show all
gduggal-bwaplatSNP*map_l100_m0_e0*
72.1141
56.5817
99.4011
87.0646
18582142591858811236
32.1429
gduggal-snapfbSNPtimap_l125_m2_e1het
96.4982
97.3699
95.6419
73.0724
1858550218588847395
46.6352
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.3939
98.8110
96.0169
66.9230
1795021618586771551
71.4656
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.3939
98.8110
96.0169
66.9230
1795021618586771551
71.4656
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.8256
97.5251
96.1361
70.1065
1737844118561746415
55.6300
cchapple-customSNPtimap_l125_m2_e1het
96.4352
97.1970
95.6851
78.2763
1855253518561837229
27.3596
gduggal-bwaplatSNPtimap_l125_m2_e0*
75.8315
61.2995
99.3947
87.0105
18548117101855511334
30.0885
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.9138
82.9573
84.8926
46.2434
1845837921853832993068
92.9979
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.6346
82.9843
84.2953
47.3907
1846437861853434533234
93.6577
jpowers-varprowlSNP*map_l150_m1_e0het
96.1124
95.8014
96.4254
81.4447
1850581118505686205
29.8834
ndellapenna-hhgaSNPtimap_l125_m2_e0het
98.8804
98.0239
99.7520
70.6633
18503373185034620
43.4783
gduggal-bwavardSNPtimap_l125_m2_e1het
94.6705
97.6529
91.8649
83.0811
18639448184971638107
6.5324
ckim-isaacSNP*map_l125_m2_e0het
77.2355
63.0466
99.6657
75.2911
1848410834184866210
16.1290
ckim-isaacSNPtimap_l125_m2_e1*
75.3035
60.4665
99.7895
72.3331
184841208518484398
20.5128
hfeng-pmm2SNPtimap_l100_m2_e1homalt
99.8756
99.8810
99.8702
62.5670
1847222184722414
58.3333
hfeng-pmm3SNPtimap_l100_m2_e1homalt
99.8675
99.8540
99.8810
62.4833
1846727184672212
54.5455
hfeng-pmm1SNPtimap_l100_m2_e1homalt
99.8621
99.8432
99.8810
62.5754
1846529184652212
54.5455
gduggal-snapvardSNP*map_l150_m1_e0het
89.3113
96.7385
82.9433
83.9813
18686630184643797256
6.7422
gduggal-snapfbSNP*map_l125_m0_e0*
95.4423
95.2231
95.6625
77.2744
1845992618460837394
47.0729
egarrison-hhgaSNPtimap_l100_m2_e1homalt
99.8593
99.7891
99.9296
62.7744
1845539184551313
100.0000
ltrigg-rtg1SNPtimap_l125_m2_e0het
98.7318
97.7485
99.7352
62.6803
1845142518453497
14.2857
ltrigg-rtg1SNPtimap_l100_m2_e1homalt
99.8025
99.7242
99.8809
61.9106
1844351184432222
100.0000
raldana-dualsentieonSNPtimap_l100_m2_e1homalt
99.8214
99.7134
99.9296
58.8080
1844153184411312
92.3077
ndellapenna-hhgaSNPtimap_l100_m2_e1homalt
99.7970
99.6756
99.9187
61.7788
1843460184341515
100.0000
ltrigg-rtg2SNPtimap_l100_m2_e1homalt
99.8051
99.6810
99.9295
59.8306
1843559184341313
100.0000
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
86.7164
95.8976
79.1397
59.1322
170887311843448594632
95.3283
bgallagher-sentieonSNPtimap_l100_m2_e1homalt
99.7943
99.6648
99.9241
59.4504
1843262184321412
85.7143
jli-customSNPtimap_l100_m2_e1homalt
99.7997
99.6593
99.9404
59.0260
1843163184311111
100.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9495
96.9056
99.0161
33.0779
1769456518416183178
97.2678
rpoplin-dv42SNPtimap_l100_m2_e1homalt
99.6670
99.5404
99.7940
62.9692
1840985184103836
94.7368
jpowers-varprowlSNPtimap_l125_m2_e1het
96.9708
96.4374
97.5102
78.4083
1840768018407470150
31.9149
dgrover-gatkSNPtimap_l100_m2_e1homalt
99.7264
99.5242
99.9294
59.8793
1840688184061311
84.6154
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
85.8694
82.8315
89.1386
45.6102
1843038201840022422180
97.2346
eyeh-varpipeSNPtimap_l125_m2_e0het
98.9240
99.5550
98.3009
76.7289
18792841839831815
4.7170
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.3371
62.5265
80.3777
56.0717
1534491961838844892592
57.7411
ckim-dragenSNPtimap_l100_m2_e1homalt
99.6178
99.3565
99.8804
57.3860
18375119183802220
90.9091
ltrigg-rtg2SNPtimap_l125_m2_e0het
98.5679
97.3564
99.8099
58.2477
1837749918379354
11.4286
gduggal-snapfbSNPtimap_l125_m2_e0het
96.4670
97.3405
95.6090
72.9883
1837450218377844395
46.8009
astatham-gatkSNPtimap_l100_m2_e1homalt
99.6312
99.3403
99.9239
59.5512
18372122183721413
92.8571
gduggal-bwafbSNPtimap_l100_m2_e1homalt
99.5933
99.3025
99.8858
63.9101
18365129183652113
61.9048
anovak-vgSNPtimap_l100_m0_e0*
81.1499
85.0168
77.6195
74.1271
1850932621836452951408
26.5911
cchapple-customSNPtimap_l125_m2_e0het
96.4167
97.1816
95.6637
78.2290
1834453218355832229
27.5240
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.5672
91.1998
86.0824
76.7383
178561723183392965857
28.9039
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.5672
91.1998
86.0824
76.7383
178561723183392965857
28.9039
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
73.3800
60.1280
94.1249
85.4676
1832712153183281144321
28.0594
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
73.3800
60.1280
94.1249
85.4676
1832712153183281144321
28.0594
jpowers-varprowlSNPtimap_l100_m2_e1homalt
99.4410
99.0808
99.8039
64.9625
18324170183243628
77.7778
ghariani-varprowlSNPtimap_l100_m2_e1homalt
99.4248
99.0700
99.7822
63.1662
18322172183224028
70.0000