PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39851-39900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.1795 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.5000 | 54.0541 | 74.0741 | 77.3109 | 20 | 17 | 20 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.3103 | 11.2903 | 66.6667 | 90.9366 | 21 | 165 | 20 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.5714 | 60.0000 | 80.0000 | 90.8425 | 21 | 14 | 20 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 74.0741 | 64.5161 | 97.5180 | 20 | 7 | 20 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9495 | 20 | 1 | 20 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.0372 | 74.0741 | 1.5504 | 75.3723 | 20 | 7 | 20 | 1270 | 4 | 0.3150 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.1580 | 76.9231 | 2.1368 | 79.9012 | 20 | 6 | 20 | 916 | 7 | 0.7642 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 34.7826 | 47.6190 | 27.3973 | 95.0441 | 20 | 22 | 20 | 53 | 3 | 5.6604 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 28.5714 | 95.7755 | 0 | 0 | 20 | 50 | 4 | 8.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 27.7778 | 95.8501 | 0 | 0 | 20 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 40.0000 | 99.0381 | 0 | 0 | 20 | 30 | 1 | 3.3333 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 8.2305 | 5.2083 | 19.6078 | 88.3429 | 20 | 364 | 20 | 82 | 46 | 56.0976 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 2.7260 | 1.4416 | 25.0000 | 74.2765 | 19 | 1299 | 20 | 60 | 43 | 71.6667 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 33.8229 | 23.4568 | 60.6061 | 79.8780 | 19 | 62 | 20 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | homalt | 34.4828 | 22.2222 | 76.9231 | 89.1667 | 20 | 70 | 20 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 92.0949 | 20 | 25 | 20 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 40.4040 | 47.6190 | 35.0877 | 98.8711 | 20 | 22 | 20 | 37 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.1429 | 46.5116 | 74.0741 | 65.8228 | 20 | 23 | 20 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 80.0000 | 71.4286 | 90.9091 | 92.0000 | 20 | 8 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 52.1262 | 44.7059 | 62.5000 | 60.0000 | 38 | 47 | 20 | 12 | 9 | 75.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 70.1754 | 71.4286 | 68.9655 | 98.1611 | 20 | 8 | 20 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D6_15 | HG002compoundhet | homalt | 13.1465 | 79.1667 | 7.1685 | 47.3585 | 19 | 5 | 20 | 259 | 232 | 89.5753 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.3548 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.8187 | 20 | 1 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.5056 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | * | 35.8056 | 23.3333 | 76.9231 | 92.6346 | 21 | 69 | 20 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | homalt | 51.9481 | 35.0877 | 100.0000 | 93.7695 | 20 | 37 | 20 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.7864 | 82.6087 | 66.6667 | 70.8738 | 19 | 4 | 20 | 10 | 8 | 80.0000 | |
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | * | 95.2381 | 90.9091 | 100.0000 | 51.2195 | 20 | 2 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.5056 | 20 | 0 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0746 | 18 | 0 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5172 | 20 | 0 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.4528 | 25 | 2 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.5947 | 20 | 1 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.8182 | 20 | 2 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.6066 | 20 | 2 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1270 | 20 | 2 | 20 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | hetalt | 80.4899 | 69.6970 | 95.2381 | 93.4375 | 23 | 10 | 20 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 89.9543 | 20 | 0 | 20 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 90.5983 | 20 | 0 | 20 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 90.7950 | 20 | 0 | 20 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.7966 | 86.9565 | 55.5556 | 81.0526 | 20 | 3 | 20 | 16 | 11 | 68.7500 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 76.9231 | 90.9091 | 66.6667 | 80.1325 | 20 | 2 | 20 | 10 | 7 | 70.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 81.6327 | 76.9231 | 86.9565 | 87.7660 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 81.6327 | 76.9231 | 86.9565 | 89.9123 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 81.6327 | 76.9231 | 86.9565 | 90.0433 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 63.4921 | 48.7805 | 90.9091 | 88.2353 | 20 | 21 | 20 | 2 | 2 | 100.0000 | |