PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39601-39650 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 100.0000 | 99.0545 | 0 | 0 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 90.8397 | 94.4444 | 87.5000 | 92.9204 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 90.8397 | 94.4444 | 87.5000 | 93.8931 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 90.8397 | 94.4444 | 87.5000 | 94.0299 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | homalt | 95.4545 | 100.0000 | 91.3043 | 92.0690 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 76.3636 | 70.0000 | 84.0000 | 72.2222 | 21 | 9 | 21 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 15.2009 | 76.9231 | 8.4337 | 82.7562 | 20 | 6 | 21 | 228 | 4 | 1.7544 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9634 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 80.7692 | 70.0000 | 95.4545 | 88.0435 | 21 | 9 | 21 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 56.0000 | 43.7500 | 77.7778 | 99.2094 | 7 | 9 | 21 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 91.4851 | 91.6667 | 91.3043 | 97.8281 | 22 | 2 | 21 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.3478 | 22 | 0 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.9309 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 95.6262 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.9487 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 21.6495 | 88.8634 | 0 | 0 | 21 | 76 | 18 | 23.6842 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 76.3636 | 91.3043 | 65.6250 | 76.2963 | 21 | 2 | 21 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.4202 | 43.4783 | 60.0000 | 40.6780 | 20 | 26 | 21 | 14 | 13 | 92.8571 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 62.0843 | 60.6061 | 63.6364 | 98.5739 | 20 | 13 | 21 | 12 | 1 | 8.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 48.2759 | 44.6809 | 52.5000 | 95.1574 | 21 | 26 | 21 | 19 | 9 | 47.3684 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 66.6667 | 75.0000 | 60.0000 | 90.9561 | 21 | 7 | 21 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 27.8146 | 34.4262 | 23.3333 | 82.2835 | 21 | 40 | 21 | 69 | 62 | 89.8551 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1579 | 52.9412 | 24.1379 | 86.1022 | 27 | 24 | 21 | 66 | 2 | 3.0303 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 46.1032 | 32.2581 | 80.7692 | 87.0647 | 20 | 42 | 21 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 28.7671 | 18.4211 | 65.6250 | 88.7719 | 21 | 93 | 21 | 11 | 10 | 90.9091 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.2621 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.3075 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 41.6667 | 20 | 3 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 91.6667 | 87.5000 | 71.7647 | 22 | 2 | 21 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 90.9836 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 92.2261 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 91.3043 | 89.9123 | 0 | 0 | 21 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 94.0217 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 95.1737 | 0 | 0 | 21 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 96.5612 | 0 | 0 | 21 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.4545 | 93.2308 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 96.9343 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.2074 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 97.2585 | 0 | 0 | 21 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | func_cds | het | 84.0000 | 87.5000 | 80.7692 | 33.3333 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.3529 | 80.7692 | 84.0000 | 97.6258 | 21 | 5 | 21 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 95.4545 | 90.4762 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 93.9891 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 91.3043 | 96.7514 | 0 | 0 | 21 | 2 | 0 | 0.0000 | |