PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39251-39300 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | het | 49.4382 | 33.3333 | 95.6522 | 94.1176 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 43.5897 | 22 | 0 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 26.6667 | 22 | 3 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.3843 | 82.1429 | 95.6522 | 87.8307 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | homalt | 84.6862 | 95.8333 | 75.8621 | 56.0606 | 23 | 1 | 22 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 81.8898 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 88.3843 | 82.1429 | 95.6522 | 53.0612 | 23 | 5 | 22 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 37.1429 | 21 | 2 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | * | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.0000 | 22 | 0 | 22 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 93.8172 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 94.5755 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l100_m2_e1 | hetalt | 83.0189 | 70.9677 | 100.0000 | 87.9121 | 22 | 9 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2973 | 94.7368 | 100.0000 | 70.6667 | 18 | 1 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 97.7778 | 100.0000 | 95.6522 | 97.4558 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 97.7778 | 100.0000 | 95.6522 | 97.5242 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.3832 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 90.7563 | 22 | 4 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 72.5000 | 19 | 4 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 86.2745 | 91.6667 | 81.4815 | 98.6855 | 22 | 2 | 22 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 81.4815 | 70.9677 | 95.6522 | 87.5676 | 22 | 9 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | hetalt | 82.6291 | 72.7273 | 95.6522 | 89.6396 | 24 | 9 | 22 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | hetalt | 75.8621 | 70.9677 | 81.4815 | 70.9677 | 22 | 9 | 22 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.6170 | 91.6667 | 95.6522 | 75.0000 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 92.4138 | 22 | 2 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.0000 | 100.0000 | 78.5714 | 85.0267 | 22 | 0 | 22 | 6 | 6 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 92.0863 | 22 | 4 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 77.5510 | 19 | 4 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.0000 | 22 | 0 | 22 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 19.6429 | 91.7708 | 0 | 0 | 22 | 90 | 37 | 41.1111 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 25.2874 | 96.0490 | 0 | 0 | 22 | 65 | 10 | 15.3846 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 4.4684 | 35.0877 | 2.3861 | 92.1778 | 20 | 37 | 22 | 900 | 12 | 1.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 50.0000 | 47.8261 | 52.3810 | 95.3998 | 22 | 24 | 22 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 67.6923 | 75.8621 | 61.1111 | 90.8397 | 22 | 7 | 22 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 35.8337 | 23.4568 | 75.8621 | 81.8750 | 19 | 62 | 22 | 7 | 7 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 29.5302 | 18.9655 | 66.6667 | 89.9083 | 22 | 94 | 22 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 29.5302 | 18.9655 | 66.6667 | 90.0000 | 22 | 94 | 22 | 11 | 10 | 90.9091 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 88.0000 | 95.6522 | 52.0833 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.6716 | 50.0000 | 95.6522 | 50.0000 | 1 | 1 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.2039 | 70.3704 | 88.0000 | 96.8983 | 19 | 8 | 22 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | tech_badpromoters | het | 56.4103 | 56.4103 | 56.4103 | 50.6329 | 22 | 17 | 22 | 17 | 10 | 58.8235 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 16.6667 | 93.6386 | 0 | 0 | 22 | 110 | 38 | 34.5455 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.1704 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.9219 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.5075 | 95.0000 | 84.6154 | 95.0570 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | homalt | 26.1905 | 100.0000 | 15.0685 | 58.0460 | 24 | 0 | 22 | 124 | 124 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 93.6170 | 91.6667 | 95.6522 | 86.7816 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |