PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39151-39200 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.4959 | 30 | 5 | 23 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.9433 | 88.0000 | 76.6667 | 85.7820 | 22 | 3 | 23 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.7037 | 91.6667 | 95.8333 | 85.4545 | 22 | 2 | 23 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 97.0361 | 23 | 3 | 23 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | homalt | 92.0000 | 92.0000 | 92.0000 | 97.6482 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.5161 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.0909 | 22 | 4 | 23 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | * | 92.0000 | 85.1852 | 100.0000 | 94.2643 | 23 | 4 | 23 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m1_e0 | het | 57.1133 | 40.6780 | 95.8333 | 92.5697 | 24 | 35 | 23 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 65.7143 | 54.7619 | 82.1429 | 95.6923 | 23 | 19 | 23 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 75.7895 | 23 | 18 | 23 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 75.7895 | 23 | 18 | 23 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.8650 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 89.0511 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 91.0156 | 23 | 3 | 23 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 74.7253 | 20 | 3 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 85.3659 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.6883 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.8017 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.7218 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 97.1429 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | * | 95.8333 | 92.0000 | 100.0000 | 96.3082 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | * | 95.8333 | 92.0000 | 100.0000 | 96.7422 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 97.9261 | 23 | 4 | 23 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | * | 37.7178 | 24.7423 | 79.3103 | 92.0330 | 24 | 73 | 23 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e0 | het | 48.4211 | 32.3944 | 95.8333 | 94.7020 | 23 | 48 | 23 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | het | 48.4211 | 32.3944 | 95.8333 | 94.8276 | 23 | 48 | 23 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.0568 | 23 | 23 | 23 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | het | 78.5714 | 66.6667 | 95.6522 | 98.0833 | 22 | 11 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | homalt | 53.6585 | 36.6667 | 100.0000 | 94.3005 | 22 | 38 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | homalt | 53.6585 | 36.6667 | 100.0000 | 94.4584 | 22 | 38 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | het | 50.5747 | 34.3750 | 95.6522 | 94.4175 | 22 | 42 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | homalt | 65.6716 | 48.8889 | 100.0000 | 94.1176 | 22 | 23 | 22 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0815 | 22 | 2 | 22 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 22 | 0 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m1_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 75.2809 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.2453 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.4393 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.7143 | 75.0000 | 100.0000 | 56.0000 | 21 | 7 | 22 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2973 | 94.7368 | 100.0000 | 73.1707 | 18 | 1 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2973 | 94.7368 | 100.0000 | 70.6667 | 18 | 1 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5637 | 22 | 0 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.6293 | 22 | 0 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.3832 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 90.7563 | 22 | 4 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 72.5000 | 19 | 4 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 8.3333 | 22 | 1 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | * | 86.2745 | 91.6667 | 81.4815 | 98.6855 | 22 | 2 | 22 | 5 | 1 | 20.0000 | |