PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3851-3900 / 86044 show all
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2214
99.5485
98.8965
52.5869
11245511926821545
20.9302
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0062
96.7177
99.3296
54.4844
195366631926113058
44.6154
gduggal-snapvardSNP*map_l150_m2_e0het
89.6113
96.7913
83.4229
84.9670
19487646192543826259
6.7695
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
46.9190
44.4652
49.6593
57.4245
1926924066192421950619313
99.0106
ltrigg-rtg2SNPtimap_l150_m1_e0*
98.7324
97.6004
99.8910
62.9401
1923947319242217
33.3333
qzeng-customSNPtisegdup*
98.7450
98.9558
98.5351
91.7233
193332041923728645
15.7343
ciseli-customSNPtisegdup*
97.2840
98.8381
95.7779
90.5362
1931022719237848118
13.9151
hfeng-pmm2SNP*map_l125_m0_e0*
99.0092
99.2468
98.7728
76.6565
192391461923623930
12.5523
hfeng-pmm3SNP*map_l125_m0_e0*
99.2955
99.2468
99.3441
74.5016
192391461923612718
14.1732
gduggal-bwaplatINDELI6_15**
86.3949
77.4322
97.7041
60.0483
19221560219235452296
65.4867
bgallagher-sentieonSNP*map_l125_m0_e0*
98.8636
99.1953
98.5342
75.8607
192291561922628650
17.4825
eyeh-varpipeSNPtisegdup*
98.6842
99.8874
97.5096
89.9888
19515221922549113
2.6477
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8678
98.1204
99.6266
68.0485
1921136819212725
6.9444
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8678
98.1204
99.6266
68.0485
1921136819212725
6.9444
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5764
98.1511
99.0054
69.1058
192173621921119336
18.6528
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5764
98.1511
99.0054
69.1058
192173621921119336
18.6528
hfeng-pmm1SNP*map_l125_m0_e0*
99.1962
99.0044
99.3888
74.3664
191921931918911833
27.9661
dgrover-gatkSNP*map_l125_m0_e0*
98.9327
98.9889
98.8765
77.4655
191891961918621848
22.0183
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8143
97.9008
99.7450
65.3085
1916841119168490
0.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8143
97.9008
99.7450
65.3085
1916841119168490
0.0000
bgallagher-sentieonSNP*map_l150_m1_e0het
98.7760
99.2493
98.3073
78.6499
191711451916533049
14.8485
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5826
97.8702
99.3056
66.7018
19162417191621346
4.4776
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5826
97.8702
99.3056
66.7018
19162417191621346
4.4776
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6105
97.8651
99.3674
66.4258
19161418191621220
0.0000
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6105
97.8651
99.3674
66.4258
19161418191621220
0.0000
gduggal-bwaplatSNPtisegdup*
98.6403
98.0243
99.2642
93.3166
19151386191571429
6.3380
ckim-vqsrSNPtisegdup*
98.8035
98.0652
99.5531
93.1259
1915937819157867
8.1395
hfeng-pmm3SNP*map_l150_m1_e0het
99.2744
99.1820
99.3670
75.4908
191581581915212213
10.6557
dgrover-gatkSNP*map_l150_m1_e0het
98.9459
99.1510
98.7416
80.1493
191521641914624449
20.0820
raldana-dualsentieonSNP*map_l125_m0_e0*
98.7848
98.7671
98.8026
73.3692
19146239191432329
3.8793
hfeng-pmm2SNP*map_l150_m1_e0het
98.9149
99.1251
98.7057
78.5477
191471691914125123
9.1634
ckim-dragenSNP*map_l125_m0_e0*
98.0759
98.7207
97.4394
76.5498
191372481914150356
11.1332
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.1734
94.6284
99.8591
48.1340
191141085191382718
66.6667
cchapple-customINDELI1_5HG002complexvarhet
99.2036
98.7960
99.6147
56.4110
17970219191307462
83.7838
egarrison-hhgaSNP*map_l125_m0_e0*
99.2012
98.6588
99.7496
73.5088
19125260191254823
47.9167
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
95.0645
96.5066
93.6649
54.5130
1326481911712931186
91.7247
rpoplin-dv42SNP*map_l125_m0_e0*
98.7955
98.5969
98.9950
72.9367
1911327219110194120
61.8557
jli-customSNP*map_l125_m0_e0*
98.9095
98.4885
99.3340
69.7637
190922931909212848
37.5000
jlack-gatkSNP*map_l150_m1_e0het
93.5301
98.8559
88.7489
85.6678
19095221190892420175
7.2314
gduggal-bwafbSNP*map_l125_m0_e0*
98.4673
98.4266
98.5079
76.7395
190803051908028976
26.2976
rpoplin-dv42SNP*map_l150_m1_e0het
98.8884
98.7989
98.9780
74.2870
1908423219078197116
58.8832
ghariani-varprowlSNP*map_l150_m1_e0het
96.8491
98.7368
95.0321
81.8341
1907224419072997197
19.7593
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
91.2907
89.1727
93.5118
37.7146
1836622301906813231081
81.7082
jlack-gatkSNP*map_l125_m0_e0*
94.5944
98.3647
91.1024
82.9942
19068317190651862148
7.9484
hfeng-pmm1SNP*map_l150_m1_e0het
99.0880
98.7264
99.4522
74.8794
190702461906410527
25.7143
raldana-dualsentieonSNP*map_l150_m1_e0het
98.5115
98.6954
98.3283
76.6149
19064252190583243
0.9259
ckim-dragenSNP*map_l150_m1_e0het
97.4659
98.6591
96.3012
80.3004
190572591905873268
9.2896
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5342
97.3339
99.7644
69.1366
19057522190574514
31.1111