PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38651-38700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 94.1964 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 94.8177 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 94.8473 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 95.1120 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 36.8421 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.3103 | 22 | 4 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | homalt | 47.5248 | 100.0000 | 31.1688 | 71.0526 | 24 | 0 | 24 | 53 | 52 | 98.1132 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.5660 | 96.0000 | 85.7143 | 92.3706 | 24 | 1 | 24 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 94.1176 | 92.3077 | 96.0000 | 95.1644 | 24 | 2 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.7025 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.3077 | 92.3077 | 92.3077 | 95.7237 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 95.9664 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 54.5455 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 24 | 0 | 24 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 85.2510 | 76.6667 | 96.0000 | 77.0642 | 23 | 7 | 24 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 19.5122 | 100.0000 | 10.8108 | 46.5060 | 24 | 0 | 24 | 198 | 197 | 99.4949 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4191 | 24 | 0 | 24 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 96.1194 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4613 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4752 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1860 | 24 | 0 | 24 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1905 | 100.0000 | 61.5385 | 74.6753 | 24 | 0 | 24 | 15 | 15 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 87.2727 | 88.8889 | 85.7143 | 96.1433 | 24 | 3 | 24 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 53.7037 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0843 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.1655 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 96.7296 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 92.3077 | 97.0721 | 0 | 0 | 24 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 38.7097 | 93.8796 | 0 | 0 | 24 | 38 | 25 | 65.7895 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 88.8889 | 99.7402 | 0 | 1 | 24 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 85.1296 | 76.4706 | 96.0000 | 92.3077 | 13 | 4 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.3704 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.7368 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.7368 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.4249 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | hetalt | 71.6418 | 55.8140 | 100.0000 | 97.4737 | 24 | 19 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | * | 47.0588 | 30.7692 | 100.0000 | 99.5667 | 24 | 54 | 24 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | homalt | 81.3559 | 70.5882 | 96.0000 | 90.8759 | 24 | 10 | 24 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2222 | 94.5946 | 100.0000 | 90.6615 | 35 | 2 | 24 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | homalt | 94.1176 | 92.3077 | 96.0000 | 92.3780 | 24 | 2 | 24 | 1 | 1 | 100.0000 | |