PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3801-3850 / 86044 show all
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
ghariani-varprowlSNPtisegdup*
98.2251
99.6929
96.7998
91.5895
19477601948064438
5.9006
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0767
99.4790
98.6777
68.4621
194771021947726112
4.5977
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0767
99.4790
98.6777
68.4621
194771021947726112
4.5977
gduggal-snapvardSNP*map_l150_m2_e1het
89.6801
96.8079
83.5299
85.0251
19713650194753840262
6.8229
ltrigg-rtg2SNPtisegdup*
99.2028
99.6980
98.7126
86.7471
19478591947525432
12.5984
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.2708
99.4280
99.1141
69.5332
194671121946717416
9.1954
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2708
99.4280
99.1141
69.5332
194671121946717416
9.1954
ltrigg-rtg1SNPtisegdup*
99.1266
99.6417
98.6169
87.5468
19467701946527331
11.3553
ndellapenna-hhgaSNPtisegdup*
99.5651
99.6059
99.5244
88.6856
1946077194609333
35.4839
cchapple-customINDELI6_15*het
98.6365
97.9268
99.3566
49.5505
98252081945712691
72.2222
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.2940
99.3207
97.2884
75.8975
194461331944654230
5.5351
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.2940
99.3207
97.2884
75.8975
194461331944654230
5.5351
gduggal-snapfbSNPtisegdup*
99.1459
99.5137
98.7809
90.9477
19442951944624023
9.5833
gduggal-bwafbSNPtisegdup*
99.0195
99.5086
98.5352
91.2837
19441961944128916
5.5363
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
ltrigg-rtg2SNP*map_l150_m2_e0het
98.1544
96.5480
99.8151
61.4966
1943869519439362
5.5556
jlack-gatkSNPtimap_l150_m1_e0*
96.1043
98.6353
93.7000
82.0564
19443269194391307125
9.5639
gduggal-bwafbSNPtimap_l150_m1_e0*
98.7276
98.5998
98.8556
76.3349
194362761943622569
30.6667
gduggal-bwavardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.6054
97.3613
99.8818
50.3445
19666533194362317
73.9130
ckim-vqsrSNP*map_l125_m1_e0het
80.8165
68.4629
98.6098
88.4760
194388954194352743
1.0949
eyeh-varpipeSNP*map_l150_m2_e0het
97.8706
99.5778
96.2209
80.3517
20048851942776322
2.8834
ckim-gatkSNP*map_l100_m1_e0homalt
83.6574
71.9327
99.9485
66.2938
19424757919424107
70.0000
ckim-gatkSNPtisegdup*
98.9344
99.3295
98.5425
92.9771
19406131194042878
2.7875
jpowers-varprowlSNPtisegdup*
98.3696
99.2783
97.4774
91.2225
193961411939850238
7.5697
ghariani-varprowlSNPtimap_l150_m1_e0*
97.8236
98.3918
97.2619
78.7439
1939531719395546133
24.3590
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8431
99.0551
98.6319
76.1009
193941851939426919
7.0632
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8431
99.0551
98.6319
76.1009
193941851939426919
7.0632
jmaeng-gatkSNPtisegdup*
98.6795
99.2681
98.0979
93.0686
19394143193923766
1.5957
ndellapenna-hhgaSNPtimap_l150_m1_e0*
99.0365
98.2955
99.7888
72.3511
19376336193764123
56.0976
anovak-vgINDELI1_5HG002complexvar*
58.0984
57.1891
59.0370
52.0780
1908014283193601343312541
93.3596
ckim-isaacSNP*map_l100_m0_e0*
74.0949
58.9233
99.7886
67.9602
193511349019354419
21.9512
ciseli-customSNPtvmap_l100_m1_e0*
82.8010
79.0049
86.9802
71.6783
193575144193472896701
24.2058
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
51.2406
42.6785
64.1003
68.1692
161762172619332108274241
39.1706
ltrigg-rtg1SNPtimap_l150_m1_e0*
98.9175
98.0418
99.8089
66.8010
19326386193293716
43.2432
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.9555
98.7078
99.2044
76.2044
193262531932615519
12.2581
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9555
98.7078
99.2044
76.2044
193262531932615519
12.2581
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.7626
98.2992
82.5903
81.8415
1924633319322407356
1.3749
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.7626
98.2992
82.5903
81.8415
1924633319322407356
1.3749
gduggal-snapplatSNPtisegdup*
99.0792
98.8483
99.3111
92.8755
193122251931713417
12.6866
jpowers-varprowlSNP*map_l150_m2_e0het
96.1913
95.9023
96.4821
82.5326
1930882519308704206
29.2614
qzeng-customINDELD6_15*het
92.5374
97.5155
88.0429
52.4636
11304288192992621996
38.0008
eyeh-varpipeSNPtimap_l150_m1_e0*
99.1809
99.6144
98.7511
77.4196
19636761929324416
6.5574
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.2458
97.9315
96.5697
82.2940
191744051928468559
8.6131
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.2458
97.9315
96.5697
82.2940
191744051928468559
8.6131
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8292
98.5239
99.1363
69.4693
192902891928416837
22.0238
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8292
98.5239
99.1363
69.4693
192902891928416837
22.0238
astatham-gatkSNPtisegdup*
99.2327
98.6385
99.8342
89.7728
1927126619269326
18.7500