PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38101-38150 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.6190 | 83.3333 | 33.3333 | 88.8149 | 30 | 6 | 28 | 56 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | tech_badpromoters | het | 80.0000 | 84.8485 | 75.6757 | 60.6383 | 28 | 5 | 28 | 9 | 1 | 11.1111 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | het | 91.8033 | 96.5517 | 87.5000 | 57.8947 | 28 | 1 | 28 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 86.1538 | 96.5517 | 77.7778 | 95.0549 | 28 | 1 | 28 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.9827 | 12.2677 | 53.8462 | 92.1805 | 33 | 236 | 28 | 24 | 13 | 54.1667 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 33.1361 | 22.5806 | 62.2222 | 91.9210 | 35 | 120 | 28 | 17 | 1 | 5.8824 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 11.3424 | 10.7807 | 11.9658 | 93.0543 | 29 | 240 | 28 | 206 | 15 | 7.2816 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | hetalt | 38.7454 | 26.7857 | 70.0000 | 97.4795 | 30 | 82 | 28 | 12 | 6 | 50.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | het | 7.6607 | 4.0816 | 62.2222 | 78.3654 | 2 | 47 | 28 | 17 | 11 | 64.7059 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | hetalt | 89.7657 | 83.8710 | 96.5517 | 80.4054 | 26 | 5 | 28 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 87.5000 | 96.5517 | 80.0000 | 94.8830 | 28 | 1 | 28 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 28 | 0 | 28 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 90.8497 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 87.3874 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 61.1111 | 26 | 2 | 28 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 78.8732 | 66.6667 | 96.5517 | 90.6452 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 48.1481 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 92.7273 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 87.4439 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.5634 | 26 | 2 | 28 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 93.8053 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 88.1857 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 61.6438 | 26 | 2 | 28 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.6684 | 92.8571 | 96.5517 | 57.3529 | 26 | 2 | 28 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 86.7257 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 93.3333 | 96.5517 | 90.3226 | 82.1839 | 28 | 1 | 28 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 86.7257 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.6364 | 28 | 2 | 28 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.5556 | 26 | 5 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 91.5916 | 28 | 1 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.5556 | 28 | 0 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.2772 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.2772 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | het | 94.9153 | 96.5517 | 93.3333 | 53.1250 | 28 | 1 | 28 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | het | 96.5517 | 96.5517 | 96.5517 | 93.2715 | 28 | 1 | 28 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.3114 | 28 | 1 | 28 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 94.9153 | 96.5517 | 93.3333 | 95.6459 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.7810 | 28 | 1 | 28 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 87.5000 | 84.8485 | 90.3226 | 93.7876 | 28 | 5 | 28 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | hetalt | 80.0000 | 68.2927 | 96.5517 | 89.6797 | 28 | 13 | 28 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 67.0213 | 64.2857 | 70.0000 | 99.4553 | 27 | 15 | 28 | 12 | 5 | 41.6667 | |