PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38051-38100 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 51.7369 | 92.5926 | 35.8974 | 95.7470 | 25 | 2 | 28 | 50 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 80.7692 | 75.0000 | 87.5000 | 96.5517 | 24 | 8 | 28 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.1538 | 77.7778 | 96.5517 | 86.0577 | 28 | 8 | 28 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 36.3636 | 28 | 1 | 28 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | homalt | 78.8732 | 77.7778 | 80.0000 | 88.6731 | 28 | 8 | 28 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | homalt | 11.9676 | 93.5484 | 6.3927 | 50.6201 | 29 | 2 | 28 | 410 | 408 | 99.5122 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.4699 | 66.6667 | 68.2927 | 90.5747 | 28 | 14 | 28 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 64.5570 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0330 | 86.1111 | 96.5517 | 86.1244 | 31 | 5 | 28 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 64.7059 | 91.6667 | 50.0000 | 51.7241 | 22 | 2 | 28 | 28 | 28 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 89.3382 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 66.6667 | 95.1445 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 66.6667 | 95.2435 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | homalt | 84.8485 | 82.3529 | 87.5000 | 89.0411 | 28 | 6 | 28 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 96.5517 | 100.0000 | 93.3333 | 92.1875 | 20 | 0 | 28 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 93.9216 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.8033 | 93.3333 | 90.3226 | 94.5899 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.8033 | 93.3333 | 90.3226 | 94.7189 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | SNP | * | map_l100_m2_e0 | hetalt | 78.8732 | 66.6667 | 96.5517 | 90.1024 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 78.8732 | 66.6667 | 96.5517 | 90.1024 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | hetalt | 83.1683 | 75.0000 | 93.3333 | 91.0448 | 30 | 10 | 28 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4043 | 74.2857 | 35.8974 | 92.5643 | 26 | 9 | 28 | 50 | 16 | 32.0000 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 95.5840 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 24 | 0 | 28 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1683 | 75.0000 | 93.3333 | 87.0690 | 27 | 9 | 28 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 10.8949 | 86.7866 | 0 | 1 | 28 | 229 | 83 | 36.2445 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 28 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 54.8387 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 93.7500 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m1_e0 | het | 93.3333 | 93.3333 | 93.3333 | 92.0000 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | het | 93.3333 | 93.3333 | 93.3333 | 93.0070 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | het | 93.3333 | 93.3333 | 93.3333 | 93.1663 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 17.9487 | 94.2563 | 0 | 0 | 28 | 128 | 43 | 33.5938 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | het | 79.5789 | 72.9730 | 87.5000 | 90.3614 | 27 | 10 | 28 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 62.4135 | 78.3784 | 51.8519 | 88.9117 | 29 | 8 | 28 | 26 | 24 | 92.3077 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 82.3529 | 75.6757 | 90.3226 | 90.4615 | 28 | 9 | 28 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 86.9198 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.9377 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m1_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 86.9198 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.9377 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | hetalt | 86.1538 | 93.3333 | 80.0000 | 81.7708 | 28 | 2 | 28 | 7 | 7 | 100.0000 | |