PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38001-38050 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 88.6719 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.8052 | 28 | 1 | 28 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 19.2440 | 90.3226 | 10.7692 | 63.7883 | 28 | 3 | 28 | 232 | 206 | 88.7931 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 91.8033 | 84.8485 | 100.0000 | 90.6040 | 28 | 5 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 94.9153 | 93.3333 | 96.5517 | 78.9855 | 28 | 2 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.5745 | 50.0000 | 73.6842 | 74.3243 | 25 | 25 | 28 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 93.0830 | 0 | 0 | 28 | 42 | 14 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 96.2175 | 0 | 0 | 28 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.8485 | 96.8116 | 0 | 0 | 28 | 5 | 2 | 40.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m0_e0 | het | 94.9153 | 96.5517 | 93.3333 | 95.7204 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 35.0893 | 21.7742 | 90.3226 | 99.9815 | 27 | 97 | 28 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.6757 | 60.8696 | 100.0000 | 69.5652 | 28 | 18 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 70.0000 | 54.9020 | 96.5517 | 96.4976 | 28 | 23 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 97.3783 | 28 | 32 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | homalt | 63.6364 | 46.6667 | 100.0000 | 97.4476 | 28 | 32 | 28 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.7213 | 0 | 0 | 28 | 28 | 11 | 39.2857 | |
| gduggal-bwavard | INDEL | D6_15 | func_cds | het | 93.3333 | 96.5517 | 90.3226 | 59.2105 | 28 | 1 | 28 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.6463 | 80.5556 | 84.8485 | 92.3788 | 29 | 7 | 28 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | het | 90.3226 | 84.8485 | 96.5517 | 55.3846 | 28 | 5 | 28 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.3333 | 59.5745 | 57.1429 | 50.5051 | 28 | 19 | 28 | 21 | 12 | 57.1429 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 70.0000 | 94.7984 | 0 | 0 | 28 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 80.0000 | 94.9857 | 0 | 0 | 28 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.5386 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.9389 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | homalt | 1.5501 | 83.3333 | 0.7823 | 29.2688 | 20 | 4 | 28 | 3551 | 3544 | 99.8029 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | homalt | 76.3271 | 79.1667 | 73.6842 | 90.0262 | 19 | 5 | 28 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 38.0952 | 23.5294 | 100.0000 | 84.7826 | 16 | 52 | 28 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 70.0000 | 99.9063 | 0 | 0 | 28 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | * | 72.7273 | 59.5745 | 93.3333 | 85.9155 | 28 | 19 | 28 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | het | 74.6667 | 59.5745 | 100.0000 | 97.7162 | 28 | 19 | 28 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | homalt | 90.3226 | 82.3529 | 100.0000 | 82.1656 | 28 | 6 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 44.0000 | 28 | 1 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.5100 | 61.9048 | 87.5000 | 94.9126 | 26 | 16 | 28 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.2079 | 65.5738 | 100.0000 | 54.0984 | 40 | 21 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 53.2117 | 92.5926 | 37.3333 | 95.7069 | 25 | 2 | 28 | 47 | 0 | 0.0000 | |