PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3751-3800 / 86044 show all
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8948
98.6708
99.1198
73.7421
1959826419594174146
83.9080
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8957
98.4694
99.3257
54.3646
195583041959213345
33.8346
hfeng-pmm2SNPtimap_l150_m1_e0*
99.2981
99.4065
99.1899
76.2408
195951171959116020
12.5000
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.2201
98.6457
99.8013
56.9126
19593269195863921
53.8462
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2893
95.0573
97.5536
44.7868
19578101819579491468
95.3157
bgallagher-sentieonSNPtimap_l150_m1_e0*
99.1792
99.3202
99.0387
75.5864
195781341957419036
18.9474
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.1492
98.5802
99.7249
57.4159
19580282195735432
59.2593
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.9702
98.9938
96.9676
70.5278
193821971957061214
2.2876
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9702
98.9938
96.9676
70.5278
193821971957061214
2.2876
ltrigg-rtg1SNP*map_l150_m2_e0het
98.4430
97.1937
99.7248
66.0349
1956856519569549
16.6667
anovak-vgINDELD1_5HG002complexvarhet
92.0015
90.8693
93.1622
52.9821
188691896195651436834
58.0780
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.0655
98.4745
99.6636
56.9081
19559303195526647
71.2121
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6551
99.1981
98.1180
73.7453
194221571955137540
10.6667
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6551
99.1981
98.1180
73.7453
194221571955137540
10.6667
dgrover-gatkSNPtimap_l150_m1_e0*
99.2284
99.1782
99.2787
76.9359
195501621954614235
24.6479
gduggal-bwavardINDELD1_5HG002complexvarhet
94.9162
98.4397
91.6362
58.2975
204413241954617841236
69.2825
cchapple-customSNP*map_l150_m2_e0het
95.7599
96.9701
94.5794
81.9061
19523610195421120245
21.8750
jpowers-varprowlSNP*map_l150_m2_e1het
96.2073
95.9191
96.4972
82.5948
1953283119532709207
29.1961
hfeng-pmm1SNPtimap_l150_m1_e0*
99.3490
99.1071
99.5921
73.5929
19536176195328023
28.7500
gduggal-snapvardSNPtimap_l150_m2_e0*
92.6480
96.1047
89.4313
82.4164
19713799195302308189
8.1889
gduggal-snapfbSNP*map_l150_m2_e0het
95.8306
96.9701
94.7174
76.6962
19523610195261089509
46.7401
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8166
98.1371
99.5056
55.0392
19492370195239732
32.9897
qzeng-customSNPtvmap_l100_m1_e0*
88.0506
79.8294
98.1596
77.4096
19559494219521366304
83.0601
jli-customSNPtisegdup*
99.6094
99.8669
99.3533
88.6519
1951126195111276
4.7244
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
65.0019
66.3696
63.6895
52.5107
13181667919510111237883
70.8712
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.7584
99.2747
98.2475
76.8599
194371421950934840
11.4943
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7584
99.2747
98.2475
76.8599
194371421950934840
11.4943
bgallagher-sentieonSNPtisegdup*
99.5103
99.8567
99.1663
89.5899
1950928195071646
3.6585
ckim-dragenSNPtisegdup*
98.5623
99.8106
97.3449
91.6401
1950037195055329
1.6917
dgrover-gatkSNPtisegdup*
99.6780
99.8413
99.5153
89.9275
195063119504956
6.3158
egarrison-hhgaSNPtimap_l150_m1_e0*
99.3657
98.9448
99.7902
73.6441
19504208195044120
48.7805
raldana-dualsentieonSNPtimap_l150_m1_e0*
98.9223
98.9600
98.8846
73.7335
19507205195032208
3.6364
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.2014
99.6118
98.7944
67.9415
19503761950323815
6.3025
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2014
99.6118
98.7944
67.9415
19503761950323815
6.3025
hfeng-pmm3SNPtisegdup*
99.7137
99.8311
99.5965
88.9183
195043319502793
3.7975
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8464
98.6772
97.0296
69.0281
193202591950159725
4.1876
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8464
98.6772
97.0296
69.0281
193202591950159725
4.1876
hfeng-pmm2SNPtisegdup*
99.6754
99.8157
99.5355
89.6871
195013619499919
9.8901
jlack-gatkSNPtisegdup*
98.4574
99.8106
97.1403
92.8551
19500371949857410
1.7422
raldana-dualsentieonSNPtisegdup*
99.6041
99.8055
99.4035
89.2386
1949938194971174
3.4188
hfeng-pmm1SNPtisegdup*
99.7442
99.8004
99.6881
88.7407
194983919496615
8.1967
ckim-dragenSNPtimap_l150_m1_e0*
98.2015
98.8636
97.5482
76.3868
194882241949549066
13.4694
rpoplin-dv42SNPtisegdup*
99.7773
99.7799
99.7748
89.3733
1949443194924419
43.1818
gduggal-bwavardSNP*map_l150_m2_e0het
93.0021
97.9685
88.5150
85.7521
19724409194912529126
4.9822
cchapple-customSNPtisegdup*
99.6040
99.8311
99.3779
91.2552
19504331949012216
13.1148
rpoplin-dv42SNPtimap_l150_m1_e0*
99.1152
98.8890
99.3424
73.3921
194932191948912991
70.5426
jli-customSNPtimap_l150_m1_e0*
99.2008
98.8636
99.5403
71.1664
19488224194869035
38.8889
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.8200
97.9622
99.6930
47.9840
134628194856060
100.0000
egarrison-hhgaSNPtisegdup*
99.6343
99.7134
99.5554
88.9440
1948156194818725
28.7356
jmaeng-gatkSNP*map_l100_m1_e0homalt
83.8037
72.1438
99.9590
65.3578
1948175221948188
100.0000