PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37851-37900 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | tech_badpromoters | het | 87.8788 | 87.8788 | 87.8788 | 83.6634 | 29 | 4 | 29 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 93.5484 | 90.7463 | 0 | 0 | 29 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | hetalt | 95.0820 | 96.6667 | 93.5484 | 84.9515 | 29 | 1 | 29 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | het | 80.7713 | 78.7879 | 82.8571 | 98.8267 | 26 | 7 | 29 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | het | 44.0534 | 31.2977 | 74.3590 | 93.8389 | 41 | 90 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | het | 43.1266 | 30.3704 | 74.3590 | 93.8967 | 41 | 94 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 1.8131 | 0.9259 | 43.2836 | 64.1711 | 1 | 107 | 29 | 38 | 22 | 57.8947 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e0 | homalt | 89.2308 | 80.5556 | 100.0000 | 84.8168 | 29 | 7 | 29 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.9741 | 29 | 8 | 29 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | * | 1.7907 | 1.3532 | 2.6460 | 56.7653 | 29 | 2114 | 29 | 1067 | 1059 | 99.2502 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 82.8571 | 80.5556 | 85.2941 | 66.0000 | 29 | 7 | 29 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | func_cds | * | 74.3590 | 67.4419 | 82.8571 | 33.9623 | 29 | 14 | 29 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 51.5647 | 89.2857 | 36.2500 | 95.6873 | 25 | 3 | 29 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.0820 | 100.0000 | 90.6250 | 75.3846 | 16 | 0 | 29 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 96.0710 | 29 | 13 | 29 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.8885 | 77.2727 | 96.6667 | 81.2500 | 34 | 10 | 29 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | hetalt | 96.6667 | 93.5484 | 100.0000 | 63.7500 | 29 | 2 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.7080 | 34 | 8 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | hetalt | 86.9872 | 79.0698 | 96.6667 | 94.6903 | 34 | 9 | 29 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | hetalt | 73.7490 | 59.6154 | 96.6667 | 97.0385 | 31 | 21 | 29 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.2963 | 29 | 0 | 29 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 68.7500 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 71.6981 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | homalt | 79.4521 | 78.3784 | 80.5556 | 88.5350 | 29 | 8 | 29 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | hetalt | 74.3590 | 59.1837 | 100.0000 | 89.2193 | 29 | 20 | 29 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | tech_badpromoters | het | 92.0635 | 87.8788 | 96.6667 | 33.3333 | 29 | 4 | 29 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.5472 | 80.0000 | 96.6667 | 61.0390 | 28 | 7 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002compoundhet | homalt | 53.2110 | 93.5484 | 37.1795 | 63.3803 | 29 | 2 | 29 | 49 | 49 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6364 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.4727 | 80.3922 | 93.5484 | 94.4840 | 41 | 10 | 29 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.8739 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.5556 | 69.0476 | 96.6667 | 91.1504 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.5301 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.2963 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.8739 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.2086 | 27 | 4 | 29 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 87.8788 | 87.8788 | 87.8788 | 93.2927 | 29 | 4 | 29 | 4 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 93.5484 | 96.6667 | 90.6250 | 83.5897 | 29 | 1 | 29 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | map_l100_m0_e0 | hetalt | 90.3728 | 84.8485 | 96.6667 | 91.4040 | 28 | 5 | 29 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.9412 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.3255 | 78.4314 | 93.5484 | 94.5993 | 40 | 11 | 29 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 57.3529 | 29 | 0 | 29 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.3051 | 100.0000 | 96.6667 | 87.7049 | 29 | 0 | 29 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | het | 78.3784 | 96.6667 | 65.9091 | 91.0751 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | het | 78.3784 | 96.6667 | 65.9091 | 92.1147 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |