PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37701-37750 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.1026 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2892 | 71.4286 | 73.1707 | 97.3325 | 30 | 12 | 30 | 11 | 2 | 18.1818 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.2066 | 30 | 0 | 30 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.9474 | 83.3333 | 75.0000 | 90.5660 | 30 | 6 | 30 | 10 | 1 | 10.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | het | 87.8788 | 78.3784 | 100.0000 | 97.0760 | 29 | 8 | 30 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | hetalt | 98.3607 | 100.0000 | 96.7742 | 88.0309 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.7542 | 72.5490 | 75.0000 | 92.6740 | 37 | 14 | 30 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 60.2656 | 47.2000 | 83.3333 | 23.4043 | 59 | 66 | 30 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | homalt | 92.3077 | 90.9091 | 93.7500 | 53.6232 | 30 | 3 | 30 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 60.0000 | 39 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.2676 | 68.5714 | 96.7742 | 85.1675 | 24 | 11 | 30 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 67.4157 | 65.2174 | 69.7674 | 63.8655 | 30 | 16 | 30 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 91.1765 | 83.7838 | 100.0000 | 84.4560 | 31 | 6 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 93.7500 | 90.9091 | 96.7742 | 90.4321 | 30 | 3 | 30 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 85.5072 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.0130 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.2881 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.1111 | 75.6098 | 100.0000 | 91.5254 | 31 | 10 | 30 | 0 | 0 | ||
| qzeng-custom | INDEL | * | tech_badpromoters | homalt | 96.8718 | 96.9697 | 96.7742 | 55.7143 | 32 | 1 | 30 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 59.0289 | 42.4658 | 96.7742 | 72.0721 | 31 | 42 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.5070 | 81.0811 | 88.2353 | 75.7143 | 30 | 7 | 30 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | het | 43.7956 | 28.3019 | 96.7742 | 87.6984 | 30 | 76 | 30 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m0_e0 | het | 93.5484 | 87.8788 | 100.0000 | 93.2127 | 29 | 4 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 78.1022 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.5195 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.8917 | 31 | 2 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.9474 | 68.1818 | 93.7500 | 97.4194 | 30 | 14 | 30 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 76.4488 | 65.9574 | 90.9091 | 92.1053 | 31 | 16 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.5177 | 64.5833 | 90.9091 | 92.6829 | 31 | 17 | 30 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 89.5522 | 90.9091 | 88.2353 | 97.8358 | 30 | 3 | 30 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.1122 | 87.8788 | 96.7742 | 59.7403 | 29 | 4 | 30 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 58.2524 | 50.8475 | 68.1818 | 80.3571 | 30 | 29 | 30 | 14 | 14 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | hetalt | 90.4198 | 84.8485 | 96.7742 | 93.9216 | 28 | 5 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 82.3529 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.4560 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.7716 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.2921 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||