PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37251-37300 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 18.8667 | 23.9437 | 15.5660 | 65.0165 | 17 | 54 | 33 | 179 | 132 | 73.7430 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.9713 | 44.0476 | 89.1892 | 83.3333 | 37 | 47 | 33 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 21.3305 | 14.5749 | 39.7590 | 79.5062 | 36 | 211 | 33 | 50 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 26.6350 | 19.2090 | 43.4211 | 75.9494 | 34 | 143 | 33 | 43 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 77.0270 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 72.7273 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 95.2722 | 0 | 0 | 33 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.4736 | 93.9394 | 97.0588 | 74.6269 | 31 | 2 | 33 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 81.5642 | 35 | 1 | 33 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 68.8073 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.0345 | 85.7143 | 97.0588 | 87.3606 | 36 | 6 | 33 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 65.6863 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | homalt | 97.0588 | 100.0000 | 94.2857 | 54.5455 | 33 | 0 | 33 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | het | 65.3674 | 67.3913 | 63.4615 | 92.2619 | 31 | 15 | 33 | 19 | 8 | 42.1053 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | het | 63.1579 | 66.6667 | 60.0000 | 93.0991 | 32 | 16 | 33 | 22 | 8 | 36.3636 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.8621 | 75.0000 | 76.7442 | 59.4340 | 6 | 2 | 33 | 10 | 5 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 53.3873 | 61.5385 | 47.1429 | 81.9588 | 16 | 10 | 33 | 37 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 52.5373 | 61.5385 | 45.8333 | 82.9384 | 16 | 10 | 33 | 39 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 52.5373 | 61.5385 | 45.8333 | 83.1382 | 16 | 10 | 33 | 39 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | het | 46.2394 | 30.6306 | 94.2857 | 92.2566 | 34 | 77 | 33 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 72.7674 | 63.8298 | 84.6154 | 79.0323 | 30 | 17 | 33 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 70.0000 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1120 | 87.5000 | 67.3469 | 73.6559 | 21 | 3 | 33 | 16 | 14 | 87.5000 | |
| raldana-dualsentieon | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 92.2414 | 34 | 17 | 33 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 88.0282 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.1267 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 92.9577 | 100.0000 | 86.8421 | 97.5641 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | het | 84.6154 | 100.0000 | 73.3333 | 98.2353 | 33 | 0 | 33 | 12 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.5899 | 33 | 1 | 33 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.2410 | 33 | 0 | 33 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 82.8962 | 72.3404 | 97.0588 | 92.0188 | 34 | 13 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 87.4539 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.2857 | 94.2857 | 94.2857 | 79.7688 | 33 | 2 | 33 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 75.8865 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 52.8000 | 35.8696 | 100.0000 | 62.5000 | 33 | 59 | 33 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 50.4505 | 33.7349 | 100.0000 | 36.5385 | 28 | 55 | 33 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 89.2216 | 34 | 17 | 33 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 80.1478 | 69.6970 | 94.2857 | 75.1773 | 23 | 10 | 33 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.9577 | 91.6667 | 94.2857 | 75.0000 | 33 | 3 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 78.5714 | 94.2857 | 95.4368 | 33 | 9 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 41.6667 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | decoy | * | 64.0777 | 50.0000 | 89.1892 | 99.8767 | 5 | 5 | 33 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | homalt | 94.2436 | 96.9697 | 91.6667 | 50.6849 | 32 | 1 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 65.3465 | 48.5294 | 100.0000 | 89.8773 | 33 | 35 | 33 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 65.3465 | 48.5294 | 100.0000 | 90.4348 | 33 | 35 | 33 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | segdup | hetalt | 81.9277 | 69.3878 | 100.0000 | 94.3005 | 34 | 15 | 33 | 0 | 0 | ||