PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37001-37050 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 70.8661 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | het | 92.1053 | 100.0000 | 85.3659 | 97.5405 | 37 | 0 | 35 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.1548 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.7209 | 35 | 0 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.0588 | 94.2857 | 100.0000 | 75.5245 | 33 | 2 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 85.1695 | 35 | 0 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6218 | 92.1569 | 97.2222 | 94.1368 | 47 | 4 | 35 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | segdup | het | 89.7436 | 100.0000 | 81.3953 | 97.3292 | 37 | 0 | 35 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4151 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.8696 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.6450 | 35 | 1 | 35 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 94.4299 | 96.8750 | 92.1053 | 92.2607 | 31 | 1 | 35 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.9783 | 35 | 0 | 35 | 0 | 0 | ||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 34.0392 | 86.1111 | 21.2121 | 74.2590 | 31 | 5 | 35 | 130 | 1 | 0.7692 | |
| ckim-dragen | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.2049 | 35 | 5 | 35 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.3482 | 63.4615 | 89.7436 | 70.8955 | 33 | 19 | 35 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | homalt | 85.0304 | 75.5556 | 97.2222 | 97.5121 | 34 | 11 | 35 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | * | 81.3226 | 81.2500 | 81.3953 | 92.2662 | 26 | 6 | 35 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | homalt | 46.8227 | 31.1111 | 94.5946 | 68.9076 | 28 | 62 | 35 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | * | 70.7071 | 66.0377 | 76.0870 | 91.4019 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 70.7071 | 66.0377 | 76.0870 | 92.4959 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | * | 70.7071 | 66.0377 | 76.0870 | 92.6518 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.7890 | 70.2703 | 63.6364 | 84.0116 | 52 | 22 | 35 | 20 | 5 | 25.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | hetalt | 75.7129 | 65.4762 | 89.7436 | 93.8583 | 55 | 29 | 35 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | * | 79.6826 | 70.2128 | 92.1053 | 89.7849 | 33 | 14 | 35 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 56.9106 | 85.3659 | 42.6829 | 94.4180 | 35 | 6 | 35 | 47 | 6 | 12.7660 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.4525 | 83.3333 | 8.5158 | 71.3389 | 35 | 7 | 35 | 376 | 1 | 0.2660 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 49.8073 | 51.0638 | 48.6111 | 53.5484 | 24 | 23 | 35 | 37 | 30 | 81.0811 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.8879 | 70.7317 | 97.2222 | 86.6171 | 29 | 12 | 35 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 58.8648 | 48.0000 | 76.0870 | 94.2284 | 12 | 13 | 35 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 61.1354 | 51.8519 | 74.4681 | 94.2402 | 14 | 13 | 35 | 12 | 2 | 16.6667 | |
| raldana-dualsentieon | INDEL | * | tech_badpromoters | het | 94.5946 | 89.7436 | 100.0000 | 50.7042 | 35 | 4 | 35 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | tech_badpromoters | het | 93.3333 | 89.7436 | 97.2222 | 44.6154 | 35 | 4 | 35 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | het | 62.2222 | 66.6667 | 58.3333 | 92.7449 | 34 | 17 | 35 | 25 | 10 | 40.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | het | 85.3948 | 97.2973 | 76.0870 | 93.4566 | 36 | 1 | 35 | 11 | 5 | 45.4545 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 72.1649 | 57.3770 | 97.2222 | 62.8866 | 35 | 26 | 35 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 79.0698 | 65.3846 | 100.0000 | 61.5385 | 34 | 18 | 35 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.2222 | 97.2222 | 97.2222 | 88.3871 | 35 | 1 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.3953 | 85.3659 | 77.7778 | 82.8244 | 35 | 6 | 35 | 10 | 5 | 50.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | het | 97.2222 | 100.0000 | 94.5946 | 90.1070 | 4 | 0 | 35 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2222 | 100.0000 | 94.5946 | 84.2553 | 35 | 0 | 35 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 93.7282 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.9091 | 83.3333 | 100.0000 | 97.6367 | 35 | 7 | 35 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | het | 95.8904 | 100.0000 | 92.1053 | 95.6867 | 37 | 0 | 35 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.0183 | 35 | 0 | 35 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | tech_badpromoters | het | 94.5946 | 89.7436 | 100.0000 | 50.0000 | 35 | 4 | 35 | 0 | 0 | ||