PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36851-36900 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.0057 | 37 | 3 | 37 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7296 | 35 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.3975 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 94.8718 | 92.5000 | 97.3684 | 93.0657 | 37 | 3 | 37 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6667 | 100.0000 | 97.3684 | 87.5000 | 37 | 0 | 37 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.2449 | 37 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7296 | 35 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 77.6471 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | tech_badpromoters | het | 97.3684 | 94.8718 | 100.0000 | 50.0000 | 37 | 2 | 37 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.0504 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2973 | 100.0000 | 94.7368 | 68.3333 | 36 | 0 | 36 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | tech_badpromoters | het | 96.0000 | 92.3077 | 100.0000 | 51.3514 | 36 | 3 | 36 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 68.5484 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 92.8713 | 36 | 5 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 92.6078 | 36 | 4 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | tech_badpromoters | het | 96.0000 | 92.3077 | 100.0000 | 51.3514 | 36 | 3 | 36 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 88.0399 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.8132 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.8788 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 87.6289 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2973 | 100.0000 | 94.7368 | 67.7966 | 36 | 0 | 36 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.6301 | 97.2973 | 100.0000 | 63.2653 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.7647 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 69.4215 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 87.8049 | 97.2973 | 93.3573 | 36 | 5 | 36 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | het | 97.2973 | 100.0000 | 94.7368 | 97.4717 | 37 | 0 | 36 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7347 | 85.7143 | 23.3766 | 97.5877 | 36 | 6 | 36 | 118 | 1 | 0.8475 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.8378 | 36 | 0 | 36 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 75.5102 | 34 | 1 | 36 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | * | 91.1392 | 83.7209 | 100.0000 | 64.3564 | 36 | 7 | 36 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_siren | hetalt | 46.8085 | 30.5556 | 100.0000 | 73.7226 | 22 | 50 | 36 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7953 | 74.0000 | 18.6528 | 60.2062 | 37 | 13 | 36 | 157 | 149 | 94.9045 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 46.7532 | 95.2615 | 0 | 0 | 36 | 41 | 4 | 9.7561 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 46.1538 | 95.6594 | 0 | 0 | 36 | 42 | 4 | 9.5238 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | het | 75.4265 | 68.6275 | 83.7209 | 82.8685 | 35 | 16 | 36 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 50.4742 | 35.4167 | 87.8049 | 93.6923 | 17 | 31 | 36 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 69.2308 | 54.5455 | 94.7368 | 83.3333 | 18 | 15 | 36 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | * | 90.3114 | 90.6250 | 90.0000 | 92.9577 | 29 | 3 | 36 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 40.0000 | 25.0000 | 100.0000 | 79.5455 | 11 | 33 | 36 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.1268 | 69.5652 | 97.2973 | 43.0769 | 32 | 14 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | het | 74.7082 | 62.7451 | 92.3077 | 81.8605 | 32 | 19 | 36 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | * | 90.0000 | 83.7209 | 97.2973 | 35.0877 | 36 | 7 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | het | 74.2268 | 60.0000 | 97.2973 | 96.7965 | 36 | 24 | 36 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.9821 | 36 | 12 | 36 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | tech_badpromoters | homalt | 93.5065 | 87.8049 | 100.0000 | 38.9831 | 36 | 5 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.1353 | 37.1134 | 100.0000 | 32.0755 | 36 | 61 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | * | 49.3151 | 33.9623 | 90.0000 | 92.9701 | 36 | 70 | 36 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | segdup | hetalt | 84.3373 | 72.9167 | 100.0000 | 94.9791 | 35 | 13 | 36 | 0 | 0 | ||
| qzeng-custom | SNP | tv | tech_badpromoters | homalt | 96.0692 | 94.8718 | 97.2973 | 51.3158 | 37 | 2 | 36 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 90.5013 | 36 | 4 | 36 | 0 | 0 | ||