PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36751-36800 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3623 | 57.5758 | 97.3684 | 68.0672 | 38 | 28 | 37 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 80.0000 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.6709 | 88.0952 | 100.0000 | 97.5610 | 37 | 5 | 37 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | het | 14.0448 | 16.8269 | 12.0521 | 71.7051 | 35 | 173 | 37 | 270 | 38 | 14.0741 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 39.3617 | 24.5033 | 100.0000 | 15.9091 | 37 | 114 | 37 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | * | 80.4348 | 78.7234 | 82.2222 | 94.5189 | 37 | 10 | 37 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | * | 81.9440 | 76.5957 | 88.0952 | 93.0116 | 36 | 11 | 37 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 37.7551 | 96.0098 | 0 | 0 | 37 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 37.7551 | 96.0863 | 0 | 0 | 37 | 61 | 6 | 9.8361 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | het | 81.3187 | 94.8718 | 71.1538 | 54.3860 | 37 | 2 | 37 | 15 | 15 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | het | 65.2174 | 93.7500 | 50.0000 | 88.5093 | 15 | 1 | 37 | 37 | 29 | 78.3784 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 47.1671 | 52.9412 | 42.5287 | 85.0772 | 9 | 8 | 37 | 50 | 1 | 2.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5507 | 97.1429 | 100.0000 | 93.0712 | 34 | 1 | 37 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.5681 | 83.3333 | 72.5490 | 91.3413 | 35 | 7 | 37 | 14 | 7 | 50.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 95.4823 | 0 | 0 | 37 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | * | het | 87.0588 | 100.0000 | 77.0833 | 96.5368 | 7 | 0 | 37 | 11 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.0391 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.4315 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 70.4762 | 90.2439 | 57.8125 | 92.6606 | 37 | 4 | 37 | 27 | 26 | 96.2963 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 71.1538 | 90.2439 | 58.7302 | 92.5969 | 37 | 4 | 37 | 26 | 19 | 73.0769 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5000 | 88.0952 | 97.3684 | 99.3838 | 37 | 5 | 37 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.0575 | 80.4348 | 90.2439 | 53.9326 | 37 | 9 | 37 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | het | 96.1039 | 100.0000 | 92.5000 | 93.3775 | 37 | 0 | 37 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.2151 | 37 | 0 | 37 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.0629 | 37 | 0 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 46.8354 | 95.6807 | 0 | 0 | 37 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | het | 84.0644 | 97.2973 | 74.0000 | 96.3530 | 36 | 1 | 37 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 58.7629 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | homalt | 85.0575 | 74.0000 | 100.0000 | 89.8630 | 37 | 13 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | HG002compoundhet | het | 5.1421 | 59.5745 | 2.6870 | 48.2525 | 28 | 19 | 37 | 1340 | 1253 | 93.5075 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 84.0909 | 99.9156 | 0 | 0 | 37 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.9476 | 40.5405 | 90.2439 | 86.2416 | 15 | 22 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 75.6646 | 71.4286 | 80.4348 | 98.6240 | 30 | 12 | 37 | 9 | 7 | 77.7778 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.1060 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.3636 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.9545 | 10 | 0 | 37 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.7500 | 39 | 0 | 37 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | hetalt | 75.2274 | 61.2903 | 97.3684 | 92.9630 | 76 | 48 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.5102 | 62.7119 | 94.8718 | 85.9206 | 37 | 22 | 37 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | hetalt | 89.1566 | 82.2222 | 97.3684 | 92.6070 | 37 | 8 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | homalt | 90.6977 | 82.9787 | 100.0000 | 93.1860 | 39 | 8 | 37 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | * | 84.8678 | 83.7209 | 86.0465 | 37.6812 | 36 | 7 | 37 | 6 | 6 | 100.0000 | |