PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36651-36700 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | tech_badpromoters | het | 92.6829 | 86.3636 | 100.0000 | 41.5385 | 38 | 6 | 38 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | tech_badpromoters | homalt | 95.0000 | 97.4359 | 92.6829 | 49.3827 | 38 | 1 | 38 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 91.9717 | 89.1304 | 95.0000 | 84.6743 | 41 | 5 | 38 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 90.6977 | 82.9787 | 100.0000 | 93.6027 | 39 | 8 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 63.4615 | 36 | 3 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3665 | 97.2973 | 97.4359 | 71.7391 | 36 | 1 | 38 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 74.7296 | 60.6061 | 97.4359 | 66.9492 | 40 | 26 | 38 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.5663 | 92.6829 | 90.4762 | 73.2484 | 38 | 3 | 38 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | hetalt | 96.2025 | 92.6829 | 100.0000 | 63.4615 | 38 | 3 | 38 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | het | 97.4359 | 97.4359 | 97.4359 | 49.3506 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 93.1667 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.6829 | 90.4762 | 95.0000 | 99.3670 | 38 | 4 | 38 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.3505 | 92.6829 | 67.8571 | 90.1060 | 38 | 3 | 38 | 18 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.6217 | 78.5714 | 52.0548 | 84.3011 | 33 | 9 | 38 | 35 | 10 | 28.5714 | |
| astatham-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.4901 | 38 | 2 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| astatham-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 91.8455 | 38 | 2 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 52.5000 | 38 | 1 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 55.1724 | 38 | 1 | 38 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.7203 | 38 | 2 | 38 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 29.0076 | 92.6829 | 17.1946 | 91.1987 | 38 | 3 | 38 | 183 | 8 | 4.3716 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdup | het | 87.3006 | 97.2973 | 79.1667 | 95.5679 | 36 | 1 | 38 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 36.0211 | 23.0321 | 82.6087 | 60.0000 | 79 | 264 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | het | 72.5537 | 88.8889 | 61.2903 | 85.7798 | 8 | 1 | 38 | 24 | 16 | 66.6667 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | het | 81.6296 | 74.3590 | 90.4762 | 83.5938 | 29 | 10 | 38 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 91.5663 | 84.4444 | 100.0000 | 50.0000 | 38 | 7 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 60.8000 | 46.3415 | 88.3721 | 66.6667 | 38 | 44 | 38 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.5663 | 90.4762 | 92.6829 | 99.3598 | 38 | 4 | 38 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.2350 | 37 | 0 | 38 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | hetalt | 95.0000 | 92.6829 | 97.4359 | 77.5862 | 38 | 3 | 38 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.5663 | 92.6829 | 90.4762 | 89.2308 | 38 | 3 | 38 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 95.0000 | 92.6829 | 97.4359 | 77.5862 | 38 | 3 | 38 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.5663 | 90.4762 | 92.6829 | 99.3618 | 38 | 4 | 38 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m1_e0 | het | 95.0000 | 97.4359 | 92.6829 | 95.6978 | 38 | 1 | 38 | 3 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 95.0000 | 90.4762 | 100.0000 | 97.4342 | 38 | 4 | 38 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 92.4908 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| ckim-vqsr | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.6357 | 38 | 2 | 38 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3933 | 77.5510 | 95.0000 | 75.6098 | 38 | 11 | 38 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | segdup | hetalt | 91.5663 | 84.4444 | 100.0000 | 88.0126 | 38 | 7 | 38 | 0 | 0 | ||