PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36201-36250 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 86.3158 | 83.6735 | 89.1304 | 77.9904 | 41 | 8 | 41 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 86.1635 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 56.7010 | 41 | 0 | 41 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 86.1635 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_siren | hetalt | 28.1292 | 17.4089 | 73.2143 | 97.8495 | 43 | 204 | 41 | 15 | 8 | 53.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.2529 | 91.1111 | 97.6190 | 93.8953 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 44.7368 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.5165 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5074 | 80.0000 | 20.3980 | 59.7194 | 40 | 10 | 41 | 160 | 156 | 97.5000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 18.9387 | 11.0818 | 65.0794 | 81.9484 | 42 | 337 | 41 | 22 | 12 | 54.5455 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 17.0622 | 9.6110 | 75.9259 | 78.6561 | 42 | 395 | 41 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.6258 | 63.6364 | 93.1818 | 93.3131 | 42 | 24 | 41 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | func_cds | * | 97.6190 | 95.3488 | 100.0000 | 48.7500 | 41 | 2 | 41 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | * | 51.5723 | 35.9649 | 91.1111 | 94.1710 | 41 | 73 | 41 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 37.3134 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | homalt | 95.3488 | 100.0000 | 91.1111 | 40.0000 | 41 | 0 | 41 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.0233 | 86.9565 | 100.0000 | 94.9068 | 40 | 6 | 41 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.8616 | 84.3137 | 85.4167 | 89.2135 | 43 | 8 | 41 | 7 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 73.2143 | 71.9298 | 74.5455 | 99.3650 | 41 | 16 | 41 | 14 | 6 | 42.8571 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 74.2081 | 66.6667 | 83.6735 | 97.8584 | 2 | 1 | 41 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | het | 76.6355 | 100.0000 | 62.1212 | 94.9309 | 37 | 0 | 41 | 25 | 5 | 20.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3374 | 97.6744 | 77.3585 | 67.4847 | 42 | 1 | 41 | 12 | 5 | 41.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 85.3553 | 85.2941 | 85.4167 | 83.5616 | 29 | 5 | 41 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 49.7946 | 72.3404 | 37.9630 | 69.8324 | 34 | 13 | 41 | 67 | 1 | 1.4925 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | het | 63.1714 | 73.4694 | 55.4054 | 79.7814 | 36 | 13 | 41 | 33 | 4 | 12.1212 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0995 | 86.0000 | 35.3448 | 60.4096 | 43 | 7 | 41 | 75 | 74 | 98.6667 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 58.9928 | 54.6667 | 64.0625 | 54.2857 | 41 | 34 | 41 | 23 | 22 | 95.6522 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 44.0143 | 35.8696 | 56.9444 | 58.6207 | 33 | 59 | 41 | 31 | 27 | 87.0968 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5900 | 97.5610 | 97.6190 | 93.3754 | 40 | 1 | 41 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | map_siren | hetalt | 86.0000 | 75.4386 | 100.0000 | 84.0467 | 43 | 14 | 41 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.8362 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.8362 | 41 | 0 | 41 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 90.8686 | 41 | 4 | 41 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1818 | 89.1304 | 97.6190 | 65.2893 | 41 | 5 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2529 | 100.0000 | 89.1304 | 87.5000 | 41 | 0 | 41 | 5 | 5 | 100.0000 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.4559 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1818 | 89.1304 | 97.6190 | 64.1026 | 41 | 5 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2529 | 100.0000 | 89.1304 | 87.2928 | 41 | 0 | 41 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.1503 | 41 | 3 | 41 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.2670 | 41 | 3 | 41 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7045 | 41 | 0 | 41 | 0 | 0 | ||