PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36101-36150 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 44.7368 | 42 | 2 | 42 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.7143 | 82.3529 | 89.3617 | 90.8382 | 42 | 9 | 42 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.3333 | 91.3043 | 95.4545 | 97.5528 | 42 | 4 | 42 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1595 | 87.2340 | 97.6744 | 75.0000 | 41 | 6 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 91.9065 | 42 | 3 | 42 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 36.7647 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8235 | 100.0000 | 97.6744 | 92.4429 | 41 | 0 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | het | 96.4350 | 97.4359 | 95.4545 | 91.6031 | 38 | 1 | 42 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 88.0965 | 85.1064 | 91.3043 | 75.1351 | 40 | 7 | 42 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.5714 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.7754 | 93.4783 | 79.2453 | 95.6699 | 43 | 3 | 42 | 11 | 4 | 36.3636 | |
| ckim-isaac | INDEL | D6_15 | segdup | hetalt | 88.6364 | 79.5918 | 100.0000 | 89.4472 | 39 | 10 | 42 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 64.6154 | 48.8372 | 95.4545 | 66.4122 | 42 | 44 | 42 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.3401 | 42 | 3 | 42 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 36.3636 | 42 | 1 | 42 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.7701 | 42 | 2 | 42 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 89.6552 | 42 | 2 | 42 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 75.7225 | 42 | 2 | 42 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 73.2484 | 42 | 1 | 42 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 73.2484 | 42 | 1 | 42 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.0000 | 84.0000 | 42.0000 | 67.7419 | 42 | 8 | 42 | 58 | 51 | 87.9310 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | homalt | 68.7117 | 88.8889 | 56.0000 | 95.0723 | 40 | 5 | 42 | 33 | 30 | 90.9091 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | het | 64.3289 | 71.6981 | 58.3333 | 98.2533 | 38 | 15 | 42 | 30 | 12 | 40.0000 | |
| anovak-vg | INDEL | D6_15 | segdup | homalt | 85.5227 | 82.0000 | 89.3617 | 91.4234 | 41 | 9 | 42 | 5 | 3 | 60.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.4545 | 95.4545 | 95.4545 | 96.8162 | 42 | 2 | 42 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 87.3112 | 42 | 2 | 42 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.3333 | 42 | 2 | 42 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 48.1481 | 42 | 2 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 67.8832 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.1683 | 91.3043 | 76.3636 | 97.8209 | 42 | 4 | 42 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 56.7010 | 42 | 1 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6744 | 97.6744 | 97.6744 | 77.7202 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 85.6655 | 23 | 3 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.7746 | 91.8919 | 100.0000 | 79.0000 | 34 | 3 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | het | 89.3617 | 85.7143 | 93.3333 | 93.1921 | 42 | 7 | 42 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 89.1688 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 90.1376 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.4545 | 91.3043 | 100.0000 | 95.5789 | 42 | 4 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 87.5000 | 79.2453 | 97.6744 | 93.5435 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 87.5000 | 79.2453 | 97.6744 | 94.2513 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 87.5000 | 79.2453 | 97.6744 | 94.4156 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 95.4545 | 89.3617 | 96.6284 | 42 | 2 | 42 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.1159 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.6603 | 93.4783 | 80.7692 | 95.8031 | 43 | 3 | 42 | 10 | 4 | 40.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.5246 | 42 | 2 | 42 | 0 | 0 | ||