PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
36051-36100 / 86044 show all
qzeng-customINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
74.4526
59.3023
100.0000
68.1818
51354200
ndellapenna-hhgaINDELI6_15func_cds*
98.8235
97.6744
100.0000
38.2353
4214200
ltrigg-rtg1INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
95.4397
004200
ltrigg-rtg1INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
94.3820
91.3043
97.6744
49.4118
4244211
100.0000
ltrigg-rtg1INDELD1_5map_l100_m2_e1hetalt
90.3226
82.3529
100.0000
93.2039
4294200
ltrigg-rtg1INDELD1_5map_l250_m0_e0*
94.2529
89.1304
100.0000
95.2596
4154200
ltrigg-rtg1INDELD6_15func_cds*
98.8235
97.6744
100.0000
46.8354
4214200
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
71.6216
4304200
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
92.9293
86.7925
100.0000
60.7477
4674200
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
78.8448
66.1017
97.6744
72.7848
39204211
100.0000
ltrigg-rtg1INDELI16_PLUSsegdup*
94.3820
89.3617
100.0000
89.7311
4254200
jli-customINDELD6_15func_cds*
98.8235
97.6744
100.0000
52.8090
4214200
jli-customINDELI16_PLUSmap_sirenhet
91.3043
85.7143
97.6744
87.6791
4274210
0.0000
jli-customINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6552
4234200
jmaeng-gatkINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6296
4234200
jmaeng-gatkINDELI6_15func_cds*
97.6744
97.6744
97.6744
41.8919
4214210
0.0000
jmaeng-gatkSNPtitech_badpromotershet
97.6744
95.4545
100.0000
48.7805
4224200
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
68.8525
61.7647
77.7778
97.8947
4226421211
91.6667
ltrigg-rtg1INDELI1_5map_l100_m1_e0hetalt
92.9362
88.6364
97.6744
92.8808
3954211
100.0000
ltrigg-rtg1INDELI1_5map_l100_m2_e0hetalt
92.9362
88.6364
97.6744
93.3846
3954211
100.0000
ltrigg-rtg1INDELI6_15func_cds*
98.8235
97.6744
100.0000
31.1475
4214200
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6744
95.4545
100.0000
76.7956
4224200
ltrigg-rtg1SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
ltrigg-rtg1SNPtvmap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
78.5047
79.2453
77.7778
68.2353
4211421212
100.0000
jpowers-varprowlINDELI1_5map_l250_m2_e1homalt
94.3820
91.3043
97.6744
93.2390
4244211
100.0000
jpowers-varprowlINDELI6_15map_l100_m2_e0het
71.7949
68.8525
75.0000
88.1104
4219421414
100.0000
jpowers-varprowlINDELI6_15map_l100_m2_e1het
71.7949
68.8525
75.0000
88.3090
4219421414
100.0000
jpowers-varprowlSNPtitech_badpromotershet
94.3820
95.4545
93.3333
56.7308
4224230
0.0000
jli-customSNP*map_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
jli-customSNPtvmap_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200het
90.6475
90.0000
91.3043
86.0606
4554242
50.0000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
40.0000
40.0000
40.0000
55.8824
3045426342
66.6667
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
54.6746
84.6154
40.3846
55.1724
112426242
67.7419
gduggal-snapvardINDELI6_15map_l150_m2_e0*
61.1650
72.0000
53.1646
88.2789
187423729
78.3784
gduggal-snapplatINDELD1_5map_l250_m0_e0*
82.6230
78.2609
87.5000
98.7626
36104260
0.0000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
37.5633
25.3589
72.4138
74.4493
5315642163
18.7500
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
8.8851
13.8889
6.5319
87.2673
40248426016
0.9983
ghariani-varprowlINDELD16_PLUSmap_l100_m1_e0het
70.0000
91.3043
56.7568
95.0634
424423222
68.7500
ghariani-varprowlINDELD1_5map_l250_m0_e0*
75.6757
91.3043
64.6154
97.7586
42442232
8.6957
ghariani-varprowlINDELI16_PLUSmap_sirenhet
73.0435
85.7143
63.6364
80.1205
427422423
95.8333
ghariani-varprowlINDELI1_5map_l250_m2_e1homalt
94.3820
91.3043
97.6744
93.9266
4244211
100.0000
gduggal-snapplatSNPtitech_badpromotershet
93.3333
95.4545
91.3043
68.9189
4224240
0.0000
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
26.6667
33.8710
21.9895
96.6397
4282421495
3.3557
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
3.5385
1.9267
21.6495
84.1374
4120874215295
62.5000
rpoplin-dv42SNPtvmap_l100_m2_e0hetalt
96.5517
100.0000
93.3333
85.0993
4204233
100.0000
raldana-dualsentieonINDELD16_PLUSmap_l100_m2_e0het
86.7606
91.6667
82.3529
94.1913
4444294
44.4444
raldana-dualsentieonINDELD1_5map_l100_m1_e0hetalt
94.3820
89.3617
100.0000
88.8298
4254200
raldana-dualsentieonINDELD6_15segduphetalt
92.3077
85.7143
100.0000
88.8298
4274200
raldana-dualsentieonINDELI1_5map_l250_m1_e0homalt
96.5517
95.4545
97.6744
93.4947
4224211
100.0000