PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36051-36100 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 74.4526 | 59.3023 | 100.0000 | 68.1818 | 51 | 35 | 42 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 38.2353 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.4397 | 0 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 90.3226 | 82.3529 | 100.0000 | 93.2039 | 42 | 9 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | * | 94.2529 | 89.1304 | 100.0000 | 95.2596 | 41 | 5 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 46.8354 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 71.6216 | 43 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9293 | 86.7925 | 100.0000 | 60.7477 | 46 | 7 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.8448 | 66.1017 | 97.6744 | 72.7848 | 39 | 20 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | * | 94.3820 | 89.3617 | 100.0000 | 89.7311 | 42 | 5 | 42 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_siren | het | 91.3043 | 85.7143 | 97.6744 | 87.6791 | 42 | 7 | 42 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.6552 | 42 | 3 | 42 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.6296 | 42 | 3 | 42 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.8919 | 42 | 1 | 42 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 48.7805 | 42 | 2 | 42 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.8525 | 61.7647 | 77.7778 | 97.8947 | 42 | 26 | 42 | 12 | 11 | 91.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 92.8808 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 93.3846 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 31.1475 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 76.7956 | 42 | 2 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 78.5047 | 79.2453 | 77.7778 | 68.2353 | 42 | 11 | 42 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.2390 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | het | 71.7949 | 68.8525 | 75.0000 | 88.1104 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | het | 71.7949 | 68.8525 | 75.0000 | 88.3090 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | het | 94.3820 | 95.4545 | 93.3333 | 56.7308 | 42 | 2 | 42 | 3 | 0 | 0.0000 | |
| jli-custom | SNP | * | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.6475 | 90.0000 | 91.3043 | 86.0606 | 45 | 5 | 42 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 40.0000 | 40.0000 | 55.8824 | 30 | 45 | 42 | 63 | 42 | 66.6667 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 54.6746 | 84.6154 | 40.3846 | 55.1724 | 11 | 2 | 42 | 62 | 42 | 67.7419 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | * | 61.1650 | 72.0000 | 53.1646 | 88.2789 | 18 | 7 | 42 | 37 | 29 | 78.3784 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | * | 82.6230 | 78.2609 | 87.5000 | 98.7626 | 36 | 10 | 42 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 37.5633 | 25.3589 | 72.4138 | 74.4493 | 53 | 156 | 42 | 16 | 3 | 18.7500 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 8.8851 | 13.8889 | 6.5319 | 87.2673 | 40 | 248 | 42 | 601 | 6 | 0.9983 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | het | 70.0000 | 91.3043 | 56.7568 | 95.0634 | 42 | 4 | 42 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 75.6757 | 91.3043 | 64.6154 | 97.7586 | 42 | 4 | 42 | 23 | 2 | 8.6957 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | het | 73.0435 | 85.7143 | 63.6364 | 80.1205 | 42 | 7 | 42 | 24 | 23 | 95.8333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.9266 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | het | 93.3333 | 95.4545 | 91.3043 | 68.9189 | 42 | 2 | 42 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.6667 | 33.8710 | 21.9895 | 96.6397 | 42 | 82 | 42 | 149 | 5 | 3.3557 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 3.5385 | 1.9267 | 21.6495 | 84.1374 | 41 | 2087 | 42 | 152 | 95 | 62.5000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.7606 | 91.6667 | 82.3529 | 94.1913 | 44 | 4 | 42 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 88.8298 | 42 | 5 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 88.8298 | 42 | 7 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |