PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3551-3600 / 86044 show all
hfeng-pmm2SNPtimap_l150_m2_e1*
99.3155
99.4306
99.2007
77.6747
206051182060116620
12.0482
cchapple-customSNP*map_l100_m0_e0het
95.9513
97.0667
94.8612
75.7604
20583622206011116255
22.8495
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
84.4279
81.5933
87.4666
33.3286
2002345172060129522912
98.6450
gduggal-snapfbSNP*map_l100_m0_e0het
95.9914
97.0526
94.9532
68.8933
20580625205831094492
44.9726
bgallagher-sentieonSNPtimap_l150_m2_e1*
99.1904
99.3389
99.0424
77.0978
205861372058219937
18.5930
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4367
96.0623
98.8510
34.0969
1978581120562239223
93.3054
dgrover-gatkSNPtimap_l150_m2_e1*
99.2396
99.1990
99.2803
78.3146
205571662055314936
24.1611
hfeng-pmm1SNPtimap_l150_m2_e1*
99.3663
99.1362
99.5975
75.1263
20544179205408323
27.7108
eyeh-varpipeSNP*map_l100_m0_e0het
97.2093
99.5661
94.9614
74.6186
211139220524108921
1.9284
egarrison-hhgaSNPtimap_l150_m2_e1*
99.3895
98.9866
99.7957
75.2728
20513210205134220
47.6190
raldana-dualsentieonSNPtimap_l150_m2_e1*
98.9365
98.9963
98.8768
75.5106
20515208205112339
3.8627
ckim-dragenSNPtimap_l150_m2_e1*
98.2199
98.8901
97.5587
78.2933
204932302050051369
13.4503
rpoplin-dv42SNPtimap_l150_m2_e1*
99.1367
98.9191
99.3552
75.1649
204992242049513393
69.9248
ckim-vqsrSNP*map_l125_m2_e1het
81.3082
69.1532
98.6474
89.1453
204979143204942814
1.4235
jli-customSNPtimap_l150_m2_e1*
99.2158
98.9046
99.5289
73.2251
20496227204949736
37.1134
gduggal-bwavardSNP*map_l100_m0_e0het
93.1046
97.6656
88.9506
81.2913
20710495204882545125
4.9116
asubramanian-gatkINDELD1_5HG002complexvarhet
99.2391
98.6082
99.8781
56.4759
20476289204842515
60.0000
ltrigg-rtg2SNP*map_l100_m0_e0het
98.1524
96.5763
99.7808
50.2243
2047972620484453
6.6667
jmaeng-gatkSNPtvmap_l100_m2_e1*
88.4662
80.9714
97.4899
81.7669
2047248112046852716
3.0361
jlack-gatkSNPtimap_l150_m2_e1*
96.1985
98.6826
93.8363
83.3002
20450273204461343127
9.4564
gduggal-bwafbSNPtimap_l150_m2_e1*
98.7513
98.6488
98.8540
78.0171
204432802044323770
29.5359
ckim-gatkSNPtvmap_l100_m2_e1*
88.4609
80.8686
97.6264
81.5863
2044648372044249717
3.4205
gduggal-snapfbINDELD6_15**
82.6720
75.4063
91.4873
42.8991
1967564172044119021873
98.4753
egarrison-hhgaINDELD1_5HG002complexvarhet
97.8863
98.0978
97.6758
52.4481
2037039520424486392
80.6584
ghariani-varprowlINDELD1_5HG002complexvarhet
95.4621
98.5649
92.5488
58.7032
204672982040716431130
68.7766
ghariani-varprowlSNPtimap_l150_m2_e1*
97.8866
98.4558
97.3240
80.2448
2040332020403561134
23.8859
cchapple-customINDELD6_15*het
98.5018
98.2488
98.7561
48.6146
1138920320403257215
83.6576
hfeng-pmm3SNPtimap_l150_m2_e0*
99.5024
99.4394
99.5655
75.5202
20397115203938914
15.7303
hfeng-pmm2SNPtimap_l150_m2_e0*
99.3133
99.4247
99.2021
77.6100
203941182039016420
12.1951
gduggal-bwaplatINDELD6_15**
86.9684
78.1121
98.0899
65.2244
20381571120387397273
68.7657
ndellapenna-hhgaSNPtimap_l150_m2_e1*
99.0741
98.3690
99.7895
74.1500
20385338203854323
53.4884
bgallagher-sentieonSNPtimap_l150_m2_e0*
99.1869
99.3321
99.0422
77.0287
203751372037119737
18.7817
ltrigg-rtg2INDELD1_5HG002complexvarhet
99.3002
99.0946
99.5066
51.3766
205771882036810144
43.5644
jpowers-varprowlSNP*map_l100_m0_e0het
96.3156
96.0340
96.5990
77.1422
2036484120365717214
29.8466
hfeng-pmm3INDELD1_5HG002complexvarhet
98.9670
98.0448
99.9068
54.1875
20359406203631911
57.8947
raldana-dualsentieonINDELD1_5HG002complexvarhet
98.9112
97.9918
99.8479
54.6492
20348417203513119
61.2903
hfeng-pmm2INDELD1_5HG002complexvarhet
98.9180
97.9581
99.8969
54.5187
20341424203462114
66.6667
dgrover-gatkSNPtimap_l150_m2_e0*
99.2366
99.1907
99.2825
78.2548
203461662034214736
24.4898
hfeng-pmm1INDELD1_5HG002complexvarhet
98.9178
97.9388
99.9165
54.1519
2033742820340179
52.9412
ltrigg-rtg1SNPtimap_l150_m2_e1*
98.9537
98.1229
99.7988
69.2768
20334389203384116
39.0244
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50*
57.8545
55.6351
60.2584
48.5091
2035816234203331341013207
98.4862
hfeng-pmm1SNPtimap_l150_m2_e0*
99.3647
99.1322
99.5983
75.0541
20334178203308223
28.0488
ndellapenna-hhgaINDELD1_5HG002complexvarhet
97.7232
97.5199
97.9274
51.5698
2025051520317430365
84.8837
ckim-isaacINDEL**hetalt
87.6357
79.0308
98.3434
43.3219
19945529220303342304
88.8889
egarrison-hhgaSNPtimap_l150_m2_e0*
99.3881
98.9811
99.7985
75.2011
20303209203034120
48.7805
raldana-dualsentieonSNPtimap_l150_m2_e0*
98.9377
98.9908
98.8846
75.4120
20305207203012299
3.9301
anovak-vgSNP*HG002compoundhet*
78.0620
76.6207
79.5586
43.6697
1978560372029752153696
70.8725
ltrigg-rtg1INDELD1_5HG002complexvarhet
99.1733
98.7383
99.6122
51.3027
20503262202947931
39.2405
ckim-dragenSNPtimap_l150_m2_e0*
98.2329
98.8933
97.5811
78.1929
202852272029250367
13.3201
eyeh-varpipeSNPtimap_l150_m2_e1*
99.1748
99.6284
98.7252
78.8203
20646772029126216
6.1069