PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
35851-35900 / 86044 show all
gduggal-snapvardINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
9.7065
87.3897
004340022
5.5000
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
19.4706
14.4444
29.8611
63.4518
392314310170
69.3069
ghariani-varprowlSNPtitech_badpromotershet
94.5055
97.7273
91.4894
52.0408
4314340
0.0000
gduggal-snapvardINDELI6_15map_l125_m0_e0*
62.0192
60.0000
64.1791
85.8351
96432416
66.6667
gduggal-snapvardINDELI6_15map_l150_m2_e1*
62.2963
74.0741
53.7500
88.5057
207433729
78.3784
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
93.4783
95.5556
91.4894
52.5253
4324340
0.0000
ndellapenna-hhgaINDELD1_5map_l250_m0_e0*
93.4783
93.4783
93.4783
97.1622
4334331
33.3333
ndellapenna-hhgaINDELD6_15func_cds*
100.0000
100.0000
100.0000
53.2609
4304300
ndellapenna-hhgaINDELD6_15map_l100_m2_e1hetalt
77.6313
68.4932
89.5833
74.3316
50234352
40.0000
mlin-fermikitINDELD6_15map_l125_m1_e0het
71.5939
64.0625
81.1321
82.2742
412343105
50.0000
qzeng-customINDELD6_15map_l125_m2_e0homalt
85.2029
86.1111
84.3137
83.9117
3154383
37.5000
qzeng-customINDELD6_15map_l125_m2_e1homalt
85.3863
86.4865
84.3137
84.1615
3254383
37.5000
qzeng-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
62.5303
57.6923
68.2540
68.8119
1511432012
60.0000
ndellapenna-hhgaINDELI1_5map_l100_m1_e0hetalt
98.8506
97.7273
100.0000
89.7375
4314300
ndellapenna-hhgaINDELI1_5map_l100_m2_e0hetalt
98.8506
97.7273
100.0000
90.7725
4314300
ndellapenna-hhgaINDELI1_5map_l250_m1_e0homalt
96.6292
97.7273
95.5556
94.4030
4314321
50.0000
qzeng-customINDELI6_15segduphomalt
91.5760
95.7447
87.7551
90.9926
4524362
33.3333
ltrigg-rtg2INDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
98.8764
97.7778
100.0000
44.8718
4414300
ltrigg-rtg2INDELD16_PLUSmap_l100_m2_e1het
91.7496
88.2353
95.5556
85.3420
4564321
50.0000
ltrigg-rtg2INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
94.0000
88.6792
100.0000
59.8131
4764300
ltrigg-rtg2INDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
92.1830
87.2340
97.7273
64.2276
4164311
100.0000
ltrigg-rtg2INDELI16_PLUSsegdup*
95.5556
91.4894
100.0000
89.7375
4344300
ltrigg-rtg2INDELI1_5map_l100_m2_e1hetalt
94.1176
88.8889
100.0000
93.7591
4054300
ltrigg-rtg2INDELI1_5map_l250_m1_e0homalt
98.8506
97.7273
100.0000
91.7625
4314300
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
93.4783
87.7551
100.0000
25.8621
4364300
raldana-dualsentieonINDELD6_15func_cds*
100.0000
100.0000
100.0000
51.1364
4304300
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8506
100.0000
97.7273
76.5957
4304311
100.0000
raldana-dualsentieonINDELI1_5map_l250_m2_e0homalt
96.6292
95.5556
97.7273
94.5342
4324311
100.0000
rpoplin-dv42INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
95.5556
95.5556
95.5556
77.2727
4324322
100.0000
rpoplin-dv42INDELI1_5map_l250_m1_e0homalt
96.6292
97.7273
95.5556
94.2602
4314321
50.0000
rpoplin-dv42SNP*map_l100_m2_e1hetalt
96.6292
100.0000
93.4783
84.9673
4304333
100.0000
rpoplin-dv42SNPtitech_badpromotershet
98.8506
97.7273
100.0000
44.1558
4314300
rpoplin-dv42SNPtvmap_l100_m2_e1hetalt
96.6292
100.0000
93.4783
84.9673
4304333
100.0000
gduggal-bwaplatINDELD6_15map_l100_m1_e0homalt
80.3738
67.1875
100.0000
87.6081
43214300
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
64.1221
47.1910
100.0000
79.8122
42474300
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
68.2540
52.4390
97.7273
85.7605
43394311
100.0000
gduggal-bwaplatINDELI1_5map_l250_m2_e0*
55.1282
38.0531
100.0000
99.0247
43704300
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
59.7222
96.2284
00432912
41.3793
gduggal-bwavardINDELI16_PLUSmap_sirenhet
68.1638
85.7143
56.5789
85.0099
427433320
60.6061
gduggal-bwavardINDELI1_5map_l250_m2_e1homalt
94.5055
93.4783
95.5556
92.6948
4334321
50.0000
eyeh-varpipeINDELD16_PLUSmap_l100_m2_e0*
58.4466
46.6667
78.1818
86.7150
4248431212
100.0000
eyeh-varpipeINDELD6_15map_l125_m2_e0homalt
81.4394
83.3333
79.6296
89.0909
306431110
90.9091
eyeh-varpipeINDELD6_15map_l125_m2_e1homalt
81.6539
83.7838
79.6296
89.2644
316431110
90.9091
eyeh-varpipeINDELD6_15map_sirenhetalt
41.0050
26.2626
93.4783
86.5103
26734333
100.0000
gduggal-bwaplatINDELD16_PLUSmap_l100_m2_e1*
60.9929
44.3299
97.7273
95.8015
43544311
100.0000
eyeh-varpipeINDELI6_15segduphomalt
82.6923
91.4894
75.4386
87.6356
434431414
100.0000
eyeh-varpipeSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.1726
304300
eyeh-varpipeSNPtitech_badpromotershet
80.3738
100.0000
67.1875
68.6275
44043210
0.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
93.6879
91.8919
95.5556
85.9375
6864322
100.0000
gduggal-bwafbINDELD1_5map_l250_m0_e0*
94.5055
93.4783
95.5556
97.5179
4334320
0.0000