PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3501-3550 / 86044 show all
bgallagher-sentieonSNP*map_l100_m0_e0het
98.8545
99.3162
98.3971
73.2385
210601452105634349
14.2857
jpowers-varprowlSNPtimap_l100_m0_e0*
97.4083
96.6745
98.1533
73.0718
2104772421048396147
37.1212
hfeng-pmm3SNP*map_l100_m0_e0het
99.3509
99.2596
99.4424
70.0348
210481572104411811
9.3220
dgrover-gatkSNP*map_l100_m0_e0het
99.0469
99.2549
98.8398
75.0691
210471582104324748
19.4332
hfeng-pmm2SNP*map_l100_m0_e0het
99.0069
99.2124
98.8022
73.2241
210381672103425523
9.0196
cchapple-customSNPtimap_l100_m0_e0*
96.8619
96.6377
97.0872
70.6515
2103973221032631173
27.4168
gduggal-bwavardSNP*HG002compoundhet*
84.7137
82.2128
87.3715
45.7405
2122945932099130342565
84.5419
gduggal-bwavardSNPtimap_l100_m0_e0*
95.3330
97.2027
93.5339
77.3132
2116260920989145195
6.5472
jlack-gatkSNP*map_l100_m0_e0het
93.8309
98.9295
89.2321
81.9092
20978227209742531189
7.4674
qzeng-customSNP*map_l150_m1_e0*
80.7203
69.2737
96.6985
86.4603
21204940520971716612
85.4749
hfeng-pmm1SNP*map_l100_m0_e0het
99.2124
98.9106
99.5159
69.6159
209742312097010227
26.4706
ckim-dragenSNP*map_l100_m0_e0het
97.6312
98.8022
96.4876
75.1408
209512542096076367
8.7811
rpoplin-dv42SNP*map_l100_m0_e0het
98.8725
98.8493
98.8958
68.4376
2096124420957234116
49.5726
raldana-dualsentieonSNP*map_l100_m0_e0het
98.7044
98.8116
98.5974
70.4890
20953252209492983
1.0067
qzeng-customSNPtimap_l125_m1_e0*
82.7982
71.8971
97.5960
82.1188
21091824420948516435
84.3023
gduggal-snapfbSNPtimap_l100_m0_e0*
96.4920
96.2060
96.7797
70.0719
2094582620947697344
49.3544
ghariani-varprowlSNP*map_l100_m0_e0het
97.0530
98.7692
95.3955
77.5266
20944261209461011206
20.3759
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
61.2290
64.8241
58.0117
44.0961
115516268209371515411698
77.1941
gduggal-bwafbSNP*map_l100_m0_e0het
98.3117
98.5852
98.0398
73.2020
209053002090641897
23.2057
jli-customSNP*map_l100_m0_e0het
98.8927
98.5522
99.2355
65.8743
208983072089816148
29.8137
egarrison-hhgaSNP*map_l100_m0_e0het
99.1151
98.5051
99.7326
69.3594
20888317208895624
42.8571
asubramanian-gatkSNP*map_l100_m1_e0het
63.0315
46.0636
99.7898
86.5707
2089424465208884412
27.2727
gduggal-snapvardSNP*HG002compoundhet*
79.9672
80.6669
79.2796
52.8107
2082949922086454532407
44.1408
gduggal-bwafbINDELD1_5HG002complexvarhet
98.1510
96.8794
99.4564
54.4051
201176482085611444
38.5965
qzeng-customSNP*map_l100_m1_e0homalt
87.6866
78.4579
99.3758
57.2534
21186581720855131129
98.4733
gduggal-bwaplatINDEL*HG002compoundhet*
80.3779
69.5961
95.1127
70.6361
208519109208431071677
63.2120
ciseli-customSNP*map_l125_m2_e0het
76.6942
71.0212
83.3520
81.2570
208228496207984154134
3.2258
astatham-gatkSNPtvmap_l100_m1_e0*
91.7374
84.8986
99.7745
70.4613
208013700207974716
34.0426
jmaeng-gatkSNP*map_l150_m1_e0*
80.0329
67.8918
97.4620
88.1625
2078198282077554141
7.5786
qzeng-customSNP*map_l125_m1_e0het
83.6399
73.7567
96.5816
86.1149
20941745120766735611
83.1293
ckim-gatkSNP*map_l150_m1_e0*
80.0337
67.8232
97.6062
88.0251
2076098492075450942
8.2515
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.7828
89.8112
93.8428
47.3895
1998322672072813601094
80.4412
ndellapenna-hhgaSNP*map_l100_m0_e0het
98.6808
97.7128
99.6681
67.9602
20720485207216932
46.3768
bgallagher-sentieonINDELD1_5HG002complexvarhet
99.8096
99.7111
99.9084
56.0707
2070560207131912
63.1579
dgrover-gatkINDELD1_5HG002complexvarhet
99.8048
99.6966
99.9132
56.2931
2070263207101811
61.1111
ckim-gatkINDELD1_5HG002complexvarhet
99.7759
99.7111
99.8409
56.3066
2070560207103315
45.4545
jlack-gatkINDELD1_5HG002complexvarhet
99.5570
99.5377
99.5763
55.9428
2066996206818829
32.9545
jmaeng-gatkINDELD1_5HG002complexvarhet
99.6962
99.5666
99.8262
56.4161
2067590206793618
50.0000
ckim-isaacINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.0619
94.5157
99.7491
65.9214
206981201206775234
65.3846
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.6261
95.9485
93.3397
58.3275
174307362067114751218
82.5763
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.6261
95.9485
93.3397
58.3275
174307362067114751218
82.5763
jli-customINDELD1_5HG002complexvarhet
99.7322
99.5618
99.9033
54.7904
206749120667206
30.0000
astatham-gatkINDELD1_5HG002complexvarhet
99.6863
99.4751
99.8985
56.1634
20656109206622112
57.1429
ckim-vqsrINDELD1_5HG002complexvarhet
99.6767
99.4799
99.8743
56.3731
20657108206612612
46.1538
gduggal-snapvardSNPtimap_l100_m0_e0*
92.9211
95.6915
90.3065
76.7821
20833938206542217198
8.9310
rpoplin-dv42INDELD1_5HG002complexvarhet
99.5249
99.3402
99.7103
55.5097
20628137206526048
80.0000
gduggal-snapfbINDELD1_5HG002complexvarhet
94.7486
94.6159
94.8816
54.6441
196471118206321113329
29.5597
ckim-dragenINDELD1_5HG002complexvarhet
99.7370
99.6292
99.8451
55.8027
2068877206323211
34.3750
ltrigg-rtg1SNP*map_l100_m0_e0het
98.4261
97.1705
99.7145
55.4883
2060560020610598
13.5593
hfeng-pmm3SNPtimap_l150_m2_e1*
99.5026
99.4402
99.5651
75.5918
20607116206039014
15.5556