PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35351-35400 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 36.8928 | 25.8537 | 64.3836 | 82.9837 | 53 | 152 | 47 | 26 | 1 | 3.8462 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 62.8863 | 47.7273 | 92.1569 | 90.4315 | 21 | 23 | 47 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | * | 88.4615 | 79.3103 | 100.0000 | 96.4259 | 46 | 12 | 47 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.9286 | 72.3077 | 100.0000 | 81.8533 | 47 | 18 | 47 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.4627 | 47 | 20 | 47 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.9610 | 47 | 0 | 47 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.4602 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 95.5128 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 90.3846 | 88.6792 | 92.1569 | 93.5361 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 90.3846 | 88.6792 | 92.1569 | 94.3080 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 90.3846 | 88.6792 | 92.1569 | 94.4565 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7914 | 47 | 0 | 47 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 57.6271 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0291 | 98.0769 | 100.0000 | 83.2143 | 51 | 1 | 47 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 92.1008 | 47 | 0 | 47 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 93.7419 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.0370 | 77.0492 | 100.0000 | 51.0417 | 47 | 14 | 47 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_siren | hetalt | 88.6792 | 82.4561 | 95.9184 | 81.0078 | 47 | 10 | 47 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 59.8250 | 53.3333 | 68.1159 | 96.2743 | 48 | 42 | 47 | 22 | 19 | 86.3636 | |
| asubramanian-gatk | INDEL | * | map_l250_m0_e0 | het | 80.3419 | 88.6792 | 73.4375 | 98.2773 | 47 | 6 | 47 | 17 | 1 | 5.8824 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.2056 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.7366 | 95.5556 | 95.9184 | 83.9869 | 43 | 2 | 47 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 82.4561 | 78.3333 | 87.0370 | 97.7070 | 47 | 13 | 47 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.0370 | 77.0492 | 100.0000 | 56.0748 | 47 | 14 | 47 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.8596 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.8152 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 95.6881 | 46 | 2 | 47 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.6448 | 47 | 0 | 47 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 54.1284 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1029 | 96.0784 | 79.6610 | 95.7645 | 49 | 2 | 47 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.9581 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | het | 93.0693 | 95.9184 | 90.3846 | 91.9255 | 47 | 2 | 47 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9459 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0338 | 46 | 2 | 47 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5040 | 47 | 0 | 47 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9967 | 98.0769 | 97.9167 | 84.3648 | 51 | 1 | 47 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.8454 | 90.1961 | 100.0000 | 88.6473 | 46 | 5 | 47 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.8185 | 95.7447 | 97.9167 | 79.0393 | 45 | 2 | 47 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 94.2238 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.0370 | 77.0492 | 100.0000 | 53.9216 | 47 | 14 | 47 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9474 | 100.0000 | 97.9167 | 92.6267 | 47 | 0 | 47 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.7136 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | het | 95.9184 | 95.9184 | 95.9184 | 92.9900 | 47 | 2 | 47 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5750 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.6296 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 54.5455 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9474 | 100.0000 | 97.9167 | 94.2238 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9253 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0963 | 46 | 2 | 47 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7132 | 47 | 0 | 47 | 0 | 0 | ||