PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35251-35300 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 37.4335 | 27.0492 | 60.7595 | 65.3509 | 33 | 89 | 48 | 31 | 14 | 45.1613 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | het | 65.2174 | 57.6923 | 75.0000 | 77.5439 | 45 | 33 | 48 | 16 | 13 | 81.2500 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 87.4687 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 95.9184 | 92.1569 | 100.0000 | 90.4573 | 47 | 4 | 48 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 91.9094 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.7641 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 92.9478 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 86.7188 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.9695 | 92.1569 | 97.9592 | 89.3478 | 47 | 4 | 48 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 87.7990 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.3241 | 82.4561 | 84.2105 | 99.3544 | 47 | 10 | 48 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | D6_15 | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 90.7308 | 50 | 0 | 48 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | segdup | * | 98.9691 | 100.0000 | 97.9592 | 95.9098 | 47 | 0 | 48 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.5926 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.0734 | 78.6885 | 100.0000 | 52.4752 | 48 | 13 | 48 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e1 | homalt | 58.5366 | 41.3793 | 100.0000 | 94.3262 | 48 | 68 | 48 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 89.3162 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 91.9255 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5000 | 95.1220 | 100.0000 | 91.0112 | 39 | 2 | 48 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 59.3789 | 75.3846 | 48.9796 | 85.4599 | 49 | 16 | 48 | 50 | 47 | 94.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 88.1119 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.6296 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 96.6569 | 49 | 2 | 47 | 10 | 4 | 40.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 55.7522 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.0000 | 100.0000 | 88.6792 | 36.1446 | 47 | 0 | 47 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.4812 | 86.9565 | 92.1569 | 51.8868 | 40 | 6 | 47 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 95.9184 | 100.0000 | 92.1569 | 95.3888 | 47 | 0 | 47 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5750 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e0 | homalt | 58.0247 | 40.8696 | 100.0000 | 94.2543 | 47 | 68 | 47 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 58.8727 | 75.0000 | 48.4536 | 84.8437 | 48 | 16 | 47 | 50 | 47 | 94.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 53.1073 | 38.5246 | 85.4545 | 67.2619 | 47 | 75 | 47 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 41.7093 | 29.6774 | 70.1493 | 82.9517 | 46 | 109 | 47 | 20 | 19 | 95.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.8826 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.7087 | 45 | 2 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | segdup | * | 100.0000 | 100.0000 | 100.0000 | 96.6284 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.3328 | 47 | 0 | 47 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 8.4568 | 34.6774 | 4.8156 | 99.4220 | 43 | 81 | 47 | 929 | 32 | 3.4446 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.6568 | 47 | 20 | 47 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | * | 59.4937 | 54.6512 | 65.2778 | 81.5385 | 47 | 39 | 47 | 25 | 24 | 96.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 50.5051 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 19.2870 | 17.7778 | 21.0762 | 81.7661 | 24 | 111 | 47 | 176 | 45 | 25.5682 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.0186 | 30.4348 | 41.2281 | 58.5455 | 49 | 112 | 47 | 67 | 58 | 86.5672 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | * | 38.7543 | 25.1938 | 83.9286 | 94.2915 | 65 | 193 | 47 | 9 | 1 | 11.1111 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 22.8155 | 12.9477 | 95.9184 | 63.1579 | 47 | 316 | 47 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 81.7391 | 73.4375 | 92.1569 | 88.6414 | 47 | 17 | 47 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | homalt | 91.1852 | 92.0000 | 90.3846 | 91.3333 | 46 | 4 | 47 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 42.3423 | 57.3171 | 33.5714 | 78.0220 | 47 | 35 | 47 | 93 | 26 | 27.9570 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 42.8058 | 31.8436 | 65.2778 | 41.9355 | 57 | 122 | 47 | 25 | 3 | 12.0000 | |