PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35151-35200 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.3333 | 92.4528 | 94.2308 | 93.2292 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.3333 | 92.4528 | 94.2308 | 94.0092 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.3333 | 92.4528 | 94.2308 | 94.1573 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | C6_15 | * | * | 31.2766 | 42.8571 | 24.6231 | 95.7633 | 3 | 4 | 49 | 150 | 44 | 29.3333 | |
| cchapple-custom | INDEL | * | map_l250_m0_e0 | het | 89.0909 | 92.4528 | 85.9649 | 97.7603 | 49 | 4 | 49 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 92.4528 | 93.7204 | 0 | 1 | 49 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 94.9817 | 95.7447 | 94.2308 | 91.3621 | 45 | 2 | 49 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.6098 | 93.3333 | 98.0000 | 75.7282 | 14 | 1 | 49 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | * | 86.7257 | 84.4828 | 89.0909 | 92.1090 | 49 | 9 | 49 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5789 | 49 | 0 | 49 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.0412 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0097 | 97.9592 | 96.0784 | 82.1678 | 48 | 1 | 49 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5094 | 49 | 0 | 49 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 97.6774 | 49 | 4 | 49 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | het | 96.9444 | 97.8261 | 96.0784 | 91.1458 | 45 | 1 | 49 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.0784 | 92.4528 | 100.0000 | 69.3750 | 49 | 4 | 49 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 61.7188 | 48 | 4 | 49 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2464 | 49 | 0 | 49 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l250_m0_e0 | het | 76.5625 | 92.4528 | 65.3333 | 98.4280 | 49 | 4 | 49 | 26 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | segdup | hetalt | 97.0297 | 94.2308 | 100.0000 | 95.7018 | 49 | 3 | 49 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 89.0909 | 80.3279 | 100.0000 | 55.0459 | 49 | 12 | 49 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0078 | 49 | 0 | 49 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.0323 | 74.2424 | 84.4828 | 92.9952 | 49 | 17 | 49 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.2977 | 49 | 0 | 49 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0078 | 49 | 0 | 49 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.6667 | 74.2424 | 90.7407 | 94.0463 | 49 | 17 | 49 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | het | 91.5888 | 92.4528 | 90.7407 | 96.9849 | 49 | 4 | 49 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9691 | 100.0000 | 97.9592 | 83.6667 | 52 | 0 | 48 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 95.9184 | 92.1569 | 100.0000 | 90.7157 | 47 | 4 | 48 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.5926 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0734 | 90.5660 | 85.7143 | 92.6606 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0734 | 90.5660 | 85.7143 | 93.5409 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0734 | 90.5660 | 85.7143 | 93.7079 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 84.0532 | 52 | 0 | 48 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 95.9184 | 92.1569 | 100.0000 | 90.8046 | 47 | 4 | 48 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 90.9247 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | * | 79.8443 | 81.0345 | 78.6885 | 95.9816 | 47 | 11 | 48 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 70.4225 | 54.3478 | 100.0000 | 51.0204 | 50 | 42 | 48 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.7379 | 29.8780 | 64.0000 | 63.0542 | 49 | 115 | 48 | 27 | 26 | 96.2963 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 61.9926 | 46.6667 | 92.3077 | 90.4936 | 21 | 24 | 48 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 66.6667 | 53.3333 | 88.8889 | 86.2595 | 48 | 42 | 48 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | * | 86.0819 | 79.3103 | 94.1176 | 91.1917 | 46 | 12 | 48 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.0362 | 72.0588 | 97.9592 | 95.6980 | 49 | 19 | 48 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | homalt | 90.5115 | 94.0000 | 87.2727 | 92.8664 | 47 | 3 | 48 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 36.6412 | 23.3010 | 85.7143 | 59.4203 | 48 | 158 | 48 | 8 | 8 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.9592 | 95.9184 | 96.0000 | 82.4561 | 47 | 2 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 43.9242 | 28.4768 | 96.0000 | 65.0350 | 43 | 108 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | het | 82.5467 | 77.0492 | 88.8889 | 82.1192 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | het | 82.5467 | 77.0492 | 88.8889 | 82.5243 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | hetalt | 79.3388 | 66.6667 | 97.9592 | 73.6559 | 48 | 24 | 48 | 1 | 1 | 100.0000 | |