PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34951-35000 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 28.0220 | 59.5556 | 0 | 388 | 51 | 131 | 41 | 31.2977 | |
| gduggal-snapplat | SNP | ti | map_siren | hetalt | 89.5492 | 91.2281 | 87.9310 | 76.7068 | 52 | 5 | 51 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m0_e0 | het | 76.1194 | 96.2264 | 62.9630 | 98.4033 | 51 | 2 | 51 | 30 | 3 | 10.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 32.0000 | 50 | 1 | 51 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3783 | 94.8905 | 100.0000 | 85.0000 | 390 | 21 | 51 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_siren | hetalt | 75.5556 | 60.7143 | 100.0000 | 88.1119 | 51 | 33 | 51 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.4371 | 78.7879 | 86.4407 | 86.8304 | 52 | 14 | 51 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.1059 | 96.1538 | 98.0769 | 54.3860 | 50 | 2 | 51 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 83.6237 | 71.8563 | 100.0000 | 63.5714 | 120 | 47 | 51 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m0_e0 | het | 76.6159 | 71.6981 | 82.2581 | 99.2102 | 38 | 15 | 51 | 11 | 6 | 54.5455 | |
| qzeng-custom | INDEL | * | map_siren | hetalt | 87.7273 | 78.1377 | 100.0000 | 88.1671 | 193 | 54 | 51 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | het | 91.8919 | 96.2264 | 87.9310 | 97.3827 | 51 | 2 | 51 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | het | 95.9849 | 95.7447 | 96.2264 | 91.7317 | 45 | 2 | 51 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6336 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 54.0541 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 82.9268 | 82.2581 | 83.6066 | 84.9383 | 51 | 11 | 51 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | het | 83.6066 | 96.2264 | 73.9130 | 98.5907 | 51 | 2 | 51 | 18 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | segdup | hetalt | 96.1154 | 94.2308 | 98.0769 | 93.2026 | 49 | 3 | 51 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0769 | 98.0769 | 98.0769 | 77.7778 | 51 | 1 | 51 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 82.2581 | 75.0000 | 91.0714 | 96.6981 | 51 | 17 | 51 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m1_e0 | hetalt | 73.9130 | 60.0000 | 96.2264 | 93.4243 | 24 | 16 | 51 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 76.1194 | 94.5395 | 0 | 0 | 51 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 44.1354 | 31.4607 | 73.9130 | 57.1429 | 28 | 61 | 51 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 66.2338 | 52.5773 | 89.4737 | 85.6784 | 51 | 46 | 51 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 67.8492 | 81.8182 | 57.9545 | 95.9781 | 54 | 12 | 51 | 37 | 7 | 18.9189 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | het | 59.3023 | 42.1488 | 100.0000 | 98.9699 | 51 | 70 | 51 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | het | 64.9682 | 48.1132 | 100.0000 | 97.9260 | 51 | 55 | 51 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 24.8175 | 14.2061 | 98.0769 | 63.8889 | 51 | 308 | 51 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | het | 69.3878 | 96.2264 | 54.2553 | 97.9008 | 51 | 2 | 51 | 43 | 2 | 4.6512 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 57.9545 | 93.8761 | 0 | 0 | 51 | 37 | 4 | 10.8108 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 78.4615 | 96.6234 | 0 | 0 | 51 | 14 | 5 | 35.7143 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 54.0541 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3039 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0714 | 83.6066 | 100.0000 | 54.4643 | 51 | 10 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 59.8425 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m0_e0 | het | 80.3150 | 96.2264 | 68.9189 | 98.4901 | 51 | 2 | 51 | 23 | 1 | 4.3478 | |
| ckim-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6336 | 50 | 2 | 51 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 52.0249 | 48.5437 | 56.0440 | 91.5428 | 50 | 53 | 51 | 40 | 23 | 57.5000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 41.0416 | 26.7677 | 87.9310 | 92.1196 | 53 | 145 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 40.5704 | 26.3682 | 87.9310 | 93.3333 | 53 | 148 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 40.1098 | 25.9804 | 87.9310 | 93.5196 | 53 | 151 | 51 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 32.8947 | 50 | 1 | 51 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | segdup | hetalt | 98.9474 | 97.9167 | 100.0000 | 96.6403 | 47 | 1 | 51 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.0769 | 95.2899 | 0 | 0 | 51 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 59.0551 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 54.4643 | 50 | 2 | 51 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 26.0870 | 49 | 2 | 51 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6596 | 50 | 2 | 51 | 0 | 0 | ||